Literature DB >> 29941452

No off-target mutations in functional genome regions of a CRISPR/Cas9-generated monkey model of muscular dystrophy.

Shuang Wang1,2, Shuaiwei Ren1,2, Raoxian Bai1,2, Puhao Xiao1,2, Qin Zhou1,2, Yin Zhou1,2, Zhigang Zhou1,2, Yuyu Niu1,2, Weizhi Ji3,2, Yongchang Chen4,2.   

Abstract

CRISPR/Cas9 is now widely used in biomedical research and has great potential for clinical applications. However, the safety and efficacy of this gene-editing technique are significant issues. Recent reports on mouse models and human cells have raised concerns that off-target mutations could hamper applying the CRISPR technology in patients. The high similarities of nonhuman primates to humans in genome content and organization, genetic diversity, physiology, and cognitive abilities have made these animals ideal experimental models for understanding human diseases and developing therapeutics. Off-target mutations of CRISPR/Cas9 have been analyzed in previous studies of nonhuman primates, but no report has investigated genome-wide off-target effects in living monkeys. Here, we used rhesus monkeys in which a genetic disorder mimicking Duchenne muscular dystrophy had previously been produced with CRISPR/Cas9. Using whole-genome sequencing to comprehensively assess on- and off-target mutations in these animals, we found that CRISPR/Cas9-based gene editing is active on the expected genomic sites without producing off-target modifications in other functional regions of the genome. These findings suggest that the CRISPR/Cas9 technique could be relatively safe and effective in modeling genetic disease in nonhuman primates and in future therapeutic research of human diseases.
© 2018 Wang et al.

Entities:  

Keywords:  CRISPR/Cas9; efficiency; gel electrophoresis; gene knockout; gene mapping; gene silencing; gene therapy; gene transfer; genetic disease; nonhuman primate; off-target; safety

Mesh:

Year:  2018        PMID: 29941452      PMCID: PMC6066302          DOI: 10.1074/jbc.AC118.004404

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  14 in total

1.  Altered neurogenesis and disrupted expression of synaptic proteins in prefrontal cortex of SHANK3-deficient non-human primate.

Authors:  Hui Zhao; Zhuchi Tu; Huijuan Xu; Sen Yan; Huanhuan Yan; Yinghui Zheng; Weili Yang; Jiezhao Zheng; Zhujun Li; Rui Tian; Youming Lu; Xiangyu Guo; Yong-Hui Jiang; Xiao-Jiang Li; Yong Q Zhang
Journal:  Cell Res       Date:  2017-07-25       Impact factor: 25.617

2.  Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects.

Authors:  Bin Shen; Wensheng Zhang; Jun Zhang; Jiankui Zhou; Jianying Wang; Li Chen; Lu Wang; Alex Hodgkins; Vivek Iyer; Xingxu Huang; William C Skarnes
Journal:  Nat Methods       Date:  2014-03-02       Impact factor: 28.547

3.  Generation of gene-modified cynomolgus monkey via Cas9/RNA-mediated gene targeting in one-cell embryos.

Authors:  Yuyu Niu; Bin Shen; Yiqiang Cui; Yongchang Chen; Jianying Wang; Lei Wang; Yu Kang; Xiaoyang Zhao; Wei Si; Wei Li; Andy Peng Xiang; Jiankui Zhou; Xuejiang Guo; Ye Bi; Chenyang Si; Bian Hu; Guoying Dong; Hong Wang; Zuomin Zhou; Tianqing Li; Tao Tan; Xiuqiong Pu; Fang Wang; Shaohui Ji; Qi Zhou; Xingxu Huang; Weizhi Ji; Jiahao Sha
Journal:  Cell       Date:  2014-01-30       Impact factor: 41.582

4.  CRISPR off-target analysis in genetically engineered rats and mice.

Authors:  Keith R Anderson; Maximilian Haeussler; Colin Watanabe; Vasantharajan Janakiraman; Jessica Lund; Zora Modrusan; Jeremy Stinson; Qixin Bei; Andrew Buechler; Charles Yu; Sobha R Thamminana; Lucinda Tam; Michael-Anne Sowick; Tuija Alcantar; Natasha O'Neil; Jinjie Li; Linda Ta; Lisa Lima; Merone Roose-Girma; Xin Rairdan; Steffen Durinck; Søren Warming
Journal:  Nat Methods       Date:  2018-05-21       Impact factor: 28.547

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

6.  Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing.

Authors:  Adrian Veres; Bridget S Gosis; Qiurong Ding; Ryan Collins; Ashok Ragavendran; Harrison Brand; Serkan Erdin; Chad A Cowan; Michael E Talkowski; Kiran Musunuru
Journal:  Cell Stem Cell       Date:  2014-07-03       Impact factor: 24.633

Review 7.  A cut above the rest: targeted genome editing technologies in human pluripotent stem cells.

Authors:  Mo Li; Keiichiro Suzuki; Na Young Kim; Guang-Hui Liu; Juan Carlos Izpisua Belmonte
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

8.  Off-target mutations are rare in Cas9-modified mice.

Authors:  Vivek Iyer; Bin Shen; Wensheng Zhang; Alex Hodgkins; Thomas Keane; Xingxu Huang; William C Skarnes
Journal:  Nat Methods       Date:  2015-06       Impact factor: 28.547

9.  CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Authors:  Manuel Stemmer; Thomas Thumberger; Maria Del Sol Keyer; Joachim Wittbrodt; Juan L Mateo
Journal:  PLoS One       Date:  2015-04-24       Impact factor: 3.240

10.  Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system.

Authors:  Tetsushi Sakuma; Ayami Nishikawa; Satoshi Kume; Kazuaki Chayama; Takashi Yamamoto
Journal:  Sci Rep       Date:  2014-06-23       Impact factor: 4.379

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  12 in total

Review 1.  Restoring the regenerative balance in neuromuscular disorders: satellite cell activation as therapeutic target in Pompe disease.

Authors:  Gerben J Schaaf; Rodrigo Canibano-Fraile; Tom J M van Gestel; Ans T van der Ploeg; W W M Pim Pijnappel
Journal:  Ann Transl Med       Date:  2019-07

Review 2.  Application of CRISPR/Cas9 System in Establishing Large Animal Models.

Authors:  Yingqi Lin; Jun Li; Caijuan Li; Zhuchi Tu; Shihua Li; Xiao-Jiang Li; Sen Yan
Journal:  Front Cell Dev Biol       Date:  2022-05-17

Review 3.  Modeling genetic diseases in nonhuman primates through embryonic and germline modification: Considerations and challenges.

Authors:  Jenna K Schmidt; Kathryn M Jones; Trevor Van Vleck; Marina E Emborg
Journal:  Sci Transl Med       Date:  2022-03-02       Impact factor: 19.319

Review 4.  The dawn of non-human primate models for neurodevelopmental disorders.

Authors:  Tomomi Aida; Guoping Feng
Journal:  Curr Opin Genet Dev       Date:  2020-07-18       Impact factor: 5.578

Review 5.  Exploiting DNA Endonucleases to Advance Mechanisms of DNA Repair.

Authors:  Marlo K Thompson; Robert W Sobol; Aishwarya Prakash
Journal:  Biology (Basel)       Date:  2021-06-14

6.  Rationally Designed Anti-CRISPR Nucleic Acid Inhibitors of CRISPR-Cas9.

Authors:  Christopher L Barkau; Daniel O'Reilly; Kushal J Rohilla; Masad J Damha; Keith T Gagnon
Journal:  Nucleic Acid Ther       Date:  2019-04-16       Impact factor: 5.486

Review 7.  CRISPR/Cas9-mediated genome editing in nonhuman primates.

Authors:  Yu Kang; Chu Chu; Fang Wang; Yuyu Niu
Journal:  Dis Model Mech       Date:  2019-10-16       Impact factor: 5.758

Review 8.  Class 2 CRISPR/Cas: an expanding biotechnology toolbox for and beyond genome editing.

Authors:  Yuyi Tang; Yan Fu
Journal:  Cell Biosci       Date:  2018-11-12       Impact factor: 7.133

Review 9.  CRISPR-Generated Animal Models of Duchenne Muscular Dystrophy.

Authors:  Kenji Rowel Q Lim; Quynh Nguyen; Kasia Dzierlega; Yiqing Huang; Toshifumi Yokota
Journal:  Genes (Basel)       Date:  2020-03-24       Impact factor: 4.096

10.  Prediction and validation of hematopoietic stem and progenitor cell off-target editing in transplanted rhesus macaques.

Authors:  Aisha A AlJanahi; Cicera R Lazzarotto; Shirley Chen; Tae-Hoon Shin; Stefan Cordes; Xing Fan; Isabel Jabara; Yifan Zhou; David J Young; Byung-Chul Lee; Kyung-Rok Yu; Yuesheng Li; Bradley Toms; Ilker Tunc; So Gun Hong; Lauren L Truitt; Julia Klermund; Geoffroy Andrieux; Miriam Y Kim; Toni Cathomen; Saar Gill; Shengdar Q Tsai; Cynthia E Dunbar
Journal:  Mol Ther       Date:  2021-06-24       Impact factor: 11.454

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