| Literature DB >> 29906594 |
E M Harding-Esch1, S S Fuller1, S-L C Chow2, A V Nori3, M A Harrison2, M Parker4, O Piepenburg4, M S Forrest4, D G Brooks4, R Patel5, P E Hay6, N Fearnley7, M J Pond2, J K Dunbar8, P D Butcher2, T Planche9, C M Lowndes1, S T Sadiq10.
Abstract
OBJECTIVES: Rapid and accurate sexually transmitted infection diagnosis can reduce onward transmission and improve treatment efficacy. We evaluated the accuracy of a 15-minute run-time recombinase polymerase amplification-based prototype point-of-care test (TwistDx) for Chlamydia trachomatis (CT) and Neisseria gonorrhoeae (NG).Entities:
Keywords: Chlamydia trachomatis; Diagnostic accuracy; Neisseria gonorrhoeae; Nucleic acid amplification tests; Performance evaluation; Point of care
Mesh:
Year: 2018 PMID: 29906594 PMCID: PMC6420679 DOI: 10.1016/j.cmi.2018.06.003
Source DB: PubMed Journal: Clin Microbiol Infect ISSN: 1198-743X Impact factor: 8.067
Fig. 1Patient and sample flow for male participants.
Fig. 2Patient and sample flow for female participants.
Participant characteristics
| Characteristic | Male participants | Female participants | ||||
|---|---|---|---|---|---|---|
| Total | Positive for CT | Positive for NG | Total | Positive for CT | Positive for NG | |
| Age | ||||||
| 16–19 years | 15 (3.8) | 1 (6.7) | 0 | 40 (10.1) | 5 (12.5) | 0 |
| 20–24 years | 126 (32.1) | 22 (17.5) | 6 (4.8) | 157 (39.7) | 18 (11.5) | 0 |
| 25–34 years | 148 (37.8) | 11 (7.4) | 2 (1.4) | 140 (35.4) | 4 (2.9) | 1 (0.7) |
| 35–44 years | 64 (16.3) | 0 | 3 (4.7) | 41 (10.4) | 1 (2.4) | 1 (2.4) |
| 45–64 years | 37 (9.4) | 1 (2.7) | 1 (2.7) | 16 (4.1) | 0 | 0 |
| 65+ years | 2 (0.5) | 0 | 0 | 1 (0.3) | 0 | 0 |
| Clinic | ||||||
| 1 | 127 (32.4) | 13 (10.2) | 7 (5.5) | 157 (39.7) | 8 (5.1) | 2 (1.3) |
| 2 | 186 (47.4) | 18 (9.7) | 4 (2.2) | 161 (40.8) | 16 (9.9) | 1 (0.6) |
| 3 | 79 (20.2) | 4 (5.1) | 1 (1.3) | 77 (19.5) | 4 (5.2) | 0 |
| Contact | ||||||
| No | 340 (87.4) | 18 (5.3) | 10 (2.9) | 363 (92.8) | 16 (4.4) | 2 (0.6) |
| CT only | 33 (8.5) | 14 (42.4) | 2 (6.1) | 22 (5.6) | 11 (50.0) | 0 |
| NG only | 7 (1.8) | 2 (28.6) | 0 | 1 (0.3) | 0 | 1 (100) |
| Both CT and NG | 9 (2.3) | 1 (11.1) | 0 | 5 (1.3) | 0 | 0 |
| Received CT/NG active medication since test/6 weeks before test | ||||||
| No | 375 (95.7) | 34 (9.1) | 11 (2.9) | 367 (92.9) | 27 (7.4) | 3 (0.8) |
| Yes | 17 (4.3) | 1 (5.9) | 1 (5.9) | 28 (7.1) | 1 (3.6) | 0 |
| Symptomatic | ||||||
| No | 249 (63.7) | 18 (7.2) | 2 (0.8) | 208 (52.8) | 14 (6.7) | 1 (0.5) |
| Yes | 142 (36.3) | 16 (11.3) | 10 (7.0) | 186 (47.2) | 14 (7.5) | 2 (1.1) |
| Currently menstruating | ||||||
| No | 368 (93.4) | 28 (7.6) | 3 (0.8) | |||
| Yes | 26 (6.6) | 0 | 0 | |||
Data are presented as n (%). CT and NG positivity was defined as reference standard (positive by at least two of three tests: clinic NAAT, RPA CT/NG assay, Cepheid GeneXpert). Male participants were considered symptomatic if they reported one or more of: discharge (clear or cloudy liquid from penis); irritation at top of penis; itching; needing to pass urine more often than usual; pain/burning when urinating. Female participants were considered symptomatic if they reported one or more: itching; discharge (clear or cloudy liquid from vagina); pain/burning when urinating; needing to pass urine more frequently; pain during sex; bleeding after sex; bleeding in between periods; pelvic abdominal pain.
CT, Chlamydia trachomatis; NAAT, nucleic acid amplification test; NG, Neisseria gonorrhoeae; RPA, recombinase polymerase amplification.
RPA CT/NG assay performance
| Characteristic | Male participants | Female participants | ||||
|---|---|---|---|---|---|---|
| FCU | FCU | SCVS | ||||
| CT | NG | CT | NG | CT | NG | |
| All participants | ||||||
| No. positive/total | 35/392 | 12/392 | 29/395 | 3/395 | 28/395 | 3/395 |
| Positive | 8.9% | 3.1% | 7.3% | 0.8% | 7.1% | 0.8% |
| Sensitivity (%, 95% CI), | 94.3 (80.8–99.3), 33/35 | 100 (73.5–100), 12/12 | 100 (88.1–100), 29/29 | 100 (29.2–100), 3/3 | 96.4 (81.7–99.9), 27/28 | 66.7 (9.0–100), 2/3 |
| Specificity (%, 95% CI), | 99.7 (98.4–100), 356/357 | 100 (99.0–100), 380/380 | 100 (99.0–100), 366/366 | 100 (99.1–100), 392/392 | 100 (99.0–100), 367/367 | 100 (99.1–100), 392/392 |
| PPV (%, 95% CI), | 97.1 (84.7–99.9), 33/34 | 100 (73.5–100), 12/12 | 100 (88.1–100), 29/29 | 100 (29.2–100), 3/3 | 100 (87.2–100), 27/27 | 100 (15.8–100), 2/2 |
| NPV (%, 95% CI), | 99.4 (98.0–99.9), 356/358 | 100 (99.0–100), 380/380 | 100 (99.0–100), 366/366 | 100 (99.1–100), 392/392 | 99.7 (98.5–100), 367/368 | 99.7 (98.6–100), 392/393 |
| Symptomatic participants | ||||||
| No. positive/total | 16/142 | 10/142 | 14/186 | 2/186 | 14/186 | 2/186 |
| Positive | 11.3% | 7.0% | 7.5% | 1.1% | 7.5% | 1.1% |
| Sensitivity (%, 95% CI), | 93.8 (69.8–99.8), 15/16 | 100 (69.2–100), 10/10 | 100 (76.8–100), 14/14 | 100 (15.8–100), 2/2 | 92.9 (66.1–99.8), 13/14 | 50 (1.3–98.7), 1/2 |
| Specificity (%, 95% CI), | 99.2 (95.7–100), 125/126 | 100 (97.2–100), 132/132 | 100 (97.9–100), 172/172 | 100 (98.0–100), 184/184 | 100 (97.9–100), 172/172 | 100 (98.0–100), 184/184 |
| PPV (%, 95% CI), | 93.8 (69.8–99.8), 15/16 | 100 (69.2–100), 10/10 | 100 (76.8–100), 14/14 | 100 (15.8–100), 2/2 | 100 (75.3–100), 13/13 | 100 (2.5–100), 1/1 |
| NPV (%, 95% CI), | 99.2 (95.7–100), 125/126 | 100 (97.2–100), 132/132 | 100 (97.9–100), 172/172 | 100 (98.0–100), 184/184 | 99.4 (96.8–100), 172/173 | 99.5 (97.0–100), 184/185 |
| Asymptomatic participants | ||||||
| No. positive/total | 18/249 | 2/249 | 15/208 | 1/208 | 14/208 | 1/208 |
| Positive | 7.2% | 0.8% | 7.2% | 0.48% | 6.7% | 0.48% |
| Sensitivity (%, 95% CI), | 100 (81.5–100), 18/18 | 100 (15.8–100), 2/2 | 100 (78.2–100), 15/15 | 100 (2.5–100), 1/1 | 100 (76.8–100), 14/14 | 100 (2.5–100), 1/1 |
| Specificity (%, 95% CI), | 100 (98.4–100), 231/231 | 100 (98.5–100), 247/247 | 100 (98.1–100), 193/193 | 100 (98.2–100), 207/207 | 100 (98.1–100), 194/194 | 100 (98.2–100), 207/207 |
| PPV (%, 95% CI), | 100 (81.5–100), 18/18 | 100 (15.8–100), 2/2 | 100 (78.2–100), 15/15 | 100 (2.5–100), 1/1 | 100 (76.8–100), 14/14 | 100 (2.5–100), 1/1 |
| NPV (%, 95% CI), | 100 (98.4–100), 231/231 | 100 (98.5–100), 247/247 | 100 (98.1–100), 193/193 | 100 (98.2–100), 207/207 | 100 (98.1–100), 194/194 | 100 (98.2–100), 207/207 |
CT and NG positivity was defined as reference standard (positive by at least two of three tests: clinic NAAT, RPA CT/NG assay, Cepheid GeneXpert). Male participants were considered symptomatic if they reported one or more of: discharge (clear or cloudy liquid from penis); irritation at top of penis; itching; needing to pass urine more often than usual; pain/burning when urinating. Female participants were considered symptomatic if they reported one or more: itching; discharge (clear or cloudy liquid from vagina); pain/burning when urinating; needing to pass urine more frequently; pain during sex; bleeding after sex; bleeding in between periods; pelvic abdominal pain.
CI, confidence interval; CT, Chlamydia trachomatis; FCU, first-catch urine; NAAT, nucleic acid amplification test; NG, Neisseria gonorrhoeae; NPV, negative predictive value; PPV, positive predictive value; RPA, recombinase polymerase amplification; SCVS, self-collected vulvovaginal swab.