| Literature DB >> 33910964 |
Deborah Dean1,2,3,4,5, Sumeetha Swaminathan2, Mike Kama6, Sophie Goemans2,7, Daniel Faktaufon6, Noor Alnabelseya7, Dawn Spelke7, Kamin Kahrizi7, Matthew Black7, Debkishore Mitra7.
Abstract
Rapid and precise detection of Chlamydia trachomatis, the leading global cause of sexually transmitted infections (STI), at the point of care (POC) is required for treatment decisions to prevent transmission and sequelae, including pelvic inflammatory disease, ectopic pregnancy, tubal factor infertility, and preterm birth. We developed a rapid POC test (POCT), termed LH-POCT, which uses loop-mediated amplification (LAMP) of nucleic acids. We performed a head-to-head comparison with the Cepheid Xpert CT/NG assay using clinician-collected, deidentified paired vaginal samples from a parent study that consecutively enrolled symptomatic and asymptomatic females over 18 years of age from the Ministry of Health and Medical Services Health Centers in Fiji. Samples were processed by the Xpert CT/NG assay and LH-POCT, blinded to the comparator. Discrepant samples were resolved by quantitative PCR. Deidentified clinical data and tests for Trichomonas vaginalis, Candida, and bacterial vaginosis (BV) were provided. There were a total of 353 samples from 327 females. C. trachomatis positivity was 16.7% (59/353), while the prevalence was 16.82% (55/327) after discrepant resolution. Seven discrepant samples resolved to four false negatives, two false positives, and one true positive for the LH-POCT. The sensitivity of the LH-POCT was 93.65% (95% confidence interval [CI], 84.53% to 98.24%), and specificity was 99.31% (95% CI, 97.53% to 99.92%). Discrepant samples clustered among women with vaginal discharge and/or BV. The prototype LH-POCT workflow has excellent performance, meeting many World Health Organization ASSURED criteria for POC tests, including a sample-to-result time of 35 min. Our LH-POCT holds promise for improving clinical practice to prevent and control C. trachomatis STIs in diverse health care settings globally.Entities:
Keywords: Chlamydia trachomatis; limit of detection; low-resource setting; point-of-care test; sexually transmitted infections
Mesh:
Year: 2021 PMID: 33910964 PMCID: PMC8218753 DOI: 10.1128/JCM.00182-21
Source DB: PubMed Journal: J Clin Microbiol ISSN: 0095-1137 Impact factor: 5.948
Participant demographics, symptoms and signs, and coinfection data for C. trachomatis LH-POCT, Xpert CT/NG, and discrepant results
| Demographics | Total ( | Discrepants ( | No. of discrepant results for: | ||
|---|---|---|---|---|---|
| Age, in yr | |||||
| 18–24 | 70 (21.41) | 16 (22.86) | 1 | 0 | 1 |
| 25–30 | 101 (30.89) | 18 (17.82) | 2 | 1 | 1 |
| 31–40 | 144 (44.04) | 21 (14.58) | 4 | 2 | 2 |
| >40 | 12 (3.67) | 0 (0) | 0 | 0 | 0 |
| Ethnicity | |||||
| iTaukei Fijian | 184 (56.27) | 44 (23.91) | 5 | 3 | 2 |
| Indo-Fijian | 90 (27.52) | 2 (2.22) | 1 | 0 | 1 |
| Other | 53 (16.21) | 9 (16.98) | 1 | 0 | 1 |
| Clinic | |||||
| Women's wellness health clinic | 245 (74.92) | 40 (16.33) | 6 | 3 | 3 |
| Reproductive health clinic | 5 (1.53) | 1 (20.00) | 0 | 0 | 0 |
| University clinic 1 | 30 (9.17) | 6 (20.00) | 1 | 0 | 1 |
| University clinic 2 | 16 (4.89) | 5 (31.25) | 0 | 0 | 0 |
| Outreach clinics | 12 (3.67) | 0 (0.00) | 0 | 0 | 0 |
| Valelevu health clinic | 19 (5.81) | 3 (15.79) | 0 | 0 | 0 |
| Asymptomatic | 123 (37.61) | 22 (17.89) | 0 | 0 | 0 |
| Symptomatic | 200 (61.16) | 33 (16.50) | 7 | 3 | 4 |
| Missing | 4 (1.22) | 0 (0) | 0 | 0 | 0 |
| Symptoms | |||||
| Dysuria | 36 | 7 | 0 | 0 | 0 |
| Urgency | 32 | 7 | 1 | 1 | 0 |
| Frequency | 37 | 11 | 1 | 1 | 0 |
| Hematuria | 8 | 1 | 0 | 0 | 0 |
| Lower abdominal pain | 93 | 16 | 1 | 1 | 0 |
| Dyspareunia | 45 | 9 | 1 | 0 | 1 |
| Bleeding with intercourse | 24 | 4 | 0 | 0 | 0 |
| Cramping | 51 | 9 | 1 | 0 | 1 |
| Vaginal discharge | 85 | 14 | 2 | 0 | 2 |
| Missing | 4 | 0 | 0 | 0 | 0 |
| No signs | 163 (50.46) | 23 (14.11) | 4 | 1 | 3 |
| Signs | 160 (49.54) | 32 (20.00) | 3 | 2 | 1 |
| Missing | 4 (1.22) | 0 (0) | 0 | 0 | 0 |
| Signs | |||||
| Cervical discharge | 95 | 21 | 0 | 0 | 0 |
| Vaginal discharge | 116 | 26 | 2 | 2 | 0 |
| Both | 60 | 15 | 1 | 0 | 1 |
| Cervical motion tenderness | 22 | 7 | 0 | 0 | 0 |
| Missing | 4 | 0 | 0 | 0 | 0 |
| No coinfection | 229 (70.03) | 32 (13.97) | 5 | 3 | 2 |
| Coinfection | 98 (29.97) | 23 (23.47) | 2 | 0 | 2 |
| Any coinfections | |||||
| 15 | 11 | 0 | 0 | 0 | |
| 15 | 3 | 0 | 0 | 0 | |
| 31 | 2 | 0 | 0 | 0 | |
| BV | 55 | 14 | 2 | 0 | 2 |
| ≥2 coinfections | 17 | 6 | 0 | 0 | 0 |
Because a participant may have more than one symptom, sign, or coinfection, the total per column may be more than 327.
LOD for C. trachomatis LAMP primer set assays for spiked-in lysis buffer
| Parameter | No. of EBs/ml | No. positive/no. tested | TTR ± SD (min) of positive reactions |
|---|---|---|---|
| No. of EBs/reaction | |||
| 14 | 466.7 | 3/3 | 14.2 ± 1.9 |
| 1.4 | 46.7 | 3/3 | 16.3 ± 2.6 |
| 0.14 | 4.7 | 1/3 | 15.8 ± NA |
| LOD confirmation | |||
| 1.4 | 46.7 | 20/20 | 14.2 ± 1.2 |
Not applicable.
Comparative performance of C. trachomatis LH-POCT with Xpert CT/NG test after C. trachomatis qPCR discrepant resolution on clinical vaginal samples
| Positive | Negative | Total | |
|---|---|---|---|
| Positive | 59 | 2 | 61 |
| Negative | 4 | 288 | 292 |
| Total | 63 | 290 | 353 |
Accuracy, 98.30% (95% CI, 96.34% to 99.37%); sensitivity, 93.65% (95% CI, 84.53% to 98.24%); specificity, 99.31% (95% CI, 97.53% to 99.92%).