Literature DB >> 29903534

Harnessing Tumor Evolution to Circumvent Resistance.

Katherine L Pogrebniak1, Christina Curtis2.   

Abstract

High-throughput sequencing can be used to measure changes in tumor composition across space and time. Specifically, comparisons of pre- and post-treatment samples can reveal the underlying clonal dynamics and resistance mechanisms. Here, we discuss evidence for distinct modes of tumor evolution and their implications for therapeutic strategies. In addition, we consider the utility of spatial tissue sampling schemes, single-cell analysis, and circulating tumor DNA to track tumor evolution and the emergence of resistance, as well as approaches that seek to forestall resistance by targeting tumor evolution. Ultimately, characterization of the (epi)genomic, transcriptomic, and phenotypic changes that occur during tumor progression coupled with computational and mathematical modeling of tumor evolutionary dynamics may inform personalized treatment strategies.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  clonal dynamics; computational modeling; therapeutic resistance; tissue correlative studies; tumor evolution

Mesh:

Substances:

Year:  2018        PMID: 29903534      PMCID: PMC6368975          DOI: 10.1016/j.tig.2018.05.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  95 in total

1.  Combined BRAF, EGFR, and MEK Inhibition in Patients with BRAFV600E-Mutant Colorectal Cancer.

Authors:  Ryan B Corcoran; Thierry André; Chloe E Atreya; Jan H M Schellens; Takayuki Yoshino; Johanna C Bendell; Antoine Hollebecque; Autumn J McRee; Salvatore Siena; Gary Middleton; Kei Muro; Michael S Gordon; Josep Tabernero; Rona Yaeger; Peter J O'Dwyer; Yves Humblet; Filip De Vos; A Scott Jung; Jan C Brase; Savina Jaeger; Severine Bettinger; Bijoyesh Mookerjee; Fatima Rangwala; Eric Van Cutsem
Journal:  Cancer Discov       Date:  2018-02-05       Impact factor: 39.397

2.  Spatial structure increases the waiting time for cancer.

Authors:  Erik A Martens; Rumen Kostadinov; Carlo C Maley; Oskar Hallatschek
Journal:  New J Phys       Date:  2011-11-28       Impact factor: 3.729

Review 3.  Somatic clonal evolution: A selection-centric perspective.

Authors:  Jacob Scott; Andriy Marusyk
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-02-02       Impact factor: 10.680

4.  Identifying single-cell molecular programs by stochastic profiling.

Authors:  Kevin A Janes; Chun-Chao Wang; Karin J Holmberg; Kristin Cabral; Joan S Brugge
Journal:  Nat Methods       Date:  2010-03-14       Impact factor: 28.547

5.  DNA damage-mediated induction of a chemoresistant niche.

Authors:  Luke A Gilbert; Michael T Hemann
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

6.  Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution.

Authors:  Shaoping Ling; Zheng Hu; Zuyu Yang; Fang Yang; Yawei Li; Pei Lin; Ke Chen; Lili Dong; Lihua Cao; Yong Tao; Lingtong Hao; Qingjian Chen; Qiang Gong; Dafei Wu; Wenjie Li; Wenming Zhao; Xiuyun Tian; Chunyi Hao; Eric A Hungate; Daniel V T Catenacci; Richard R Hudson; Wen-Hsiung Li; Xuemei Lu; Chung-I Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-11       Impact factor: 11.205

7.  Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.

Authors:  Marco Gerlinger; Andrew J Rowan; Stuart Horswell; James Larkin; David Endesfelder; Eva Gronroos; Pierre Martinez; Nicholas Matthews; Aengus Stewart; Charles Swanton; M Math; Patrick Tarpey; Ignacio Varela; Benjamin Phillimore; Sharmin Begum; Neil Q McDonald; Adam Butler; David Jones; Keiran Raine; Calli Latimer; Claudio R Santos; Mahrokh Nohadani; Aron C Eklund; Bradley Spencer-Dene; Graham Clark; Lisa Pickering; Gordon Stamp; Martin Gore; Zoltan Szallasi; Julian Downward; P Andrew Futreal
Journal:  N Engl J Med       Date:  2012-03-08       Impact factor: 91.245

8.  A Big Bang model of human colorectal tumor growth.

Authors:  Andrea Sottoriva; Haeyoun Kang; Zhicheng Ma; Trevor A Graham; Matthew P Salomon; Junsong Zhao; Paul Marjoram; Kimberly Siegmund; Michael F Press; Darryl Shibata; Christina Curtis
Journal:  Nat Genet       Date:  2015-02-09       Impact factor: 38.330

9.  Clonal evolution in breast cancer revealed by single nucleus genome sequencing.

Authors:  Yong Wang; Jill Waters; Marco L Leung; Anna Unruh; Whijae Roh; Xiuqing Shi; Ken Chen; Paul Scheet; Selina Vattathil; Han Liang; Asha Multani; Hong Zhang; Rui Zhao; Franziska Michor; Funda Meric-Bernstam; Nicholas E Navin
Journal:  Nature       Date:  2014-07-30       Impact factor: 49.962

10.  Simultaneous evolutionary expansion and constraint of genomic heterogeneity in multifocal lung cancer.

Authors:  Pengfei Ma; Yujie Fu; Mei-Chun Cai; Ying Yan; Ying Jing; Shengzhe Zhang; Minjiang Chen; Jie Wu; Ying Shen; Liang Zhu; Hong-Zhuan Chen; Wei-Qiang Gao; Mengzhao Wang; Zhenyu Gu; Trever G Bivona; Xiaojing Zhao; Guanglei Zhuang
Journal:  Nat Commun       Date:  2017-10-10       Impact factor: 14.919

View more
  17 in total

Review 1.  Characterizing the ecological and evolutionary dynamics of cancer.

Authors:  Nastaran Zahir; Ruping Sun; Daniel Gallahan; Robert A Gatenby; Christina Curtis
Journal:  Nat Genet       Date:  2020-07-27       Impact factor: 38.330

2.  Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data.

Authors:  Emily F Davis-Marcisak; Thomas D Sherman; Pranay Orugunta; Genevieve L Stein-O'Brien; Sidharth V Puram; Evanthia T Roussos Torres; Alexander C Hopkins; Elizabeth M Jaffee; Alexander V Favorov; Bahman Afsari; Loyal A Goff; Elana J Fertig
Journal:  Cancer Res       Date:  2019-07-23       Impact factor: 12.701

3.  Tumor metabolism: metabolic alterations and heterogeneity in cancer progression.

Authors:  Anna Sebestyén
Journal:  Cancer Metastasis Rev       Date:  2021-12       Impact factor: 9.264

4.  Novel Plasma Proteomic Biomarkers for Early Identification of Induction Chemotherapy Beneficiaries in Locoregionally Advanced Nasopharyngeal Carcinoma.

Authors:  Shan-Qiang Zhang; Su-Ming Pan; Shu-Zhen Lai; Hui-Jing Situ; Jun Liu; Wen-Jie Dai; Si-Xian Liang; Li-Qing Zhou; Qi-Qi Lu; Pei-Feng Ke; Fan Zhang; Hai-Bin Chen; Ji-Cheng Li
Journal:  Front Oncol       Date:  2022-06-30       Impact factor: 5.738

5.  Spatial genomics enables multi-modal study of clonal heterogeneity in tissues.

Authors:  Tongtong Zhao; Zachary D Chiang; Julia W Morriss; Lindsay M LaFave; Evan M Murray; Isabella Del Priore; Kevin Meli; Caleb A Lareau; Naeem M Nadaf; Jilong Li; Andrew S Earl; Evan Z Macosko; Tyler Jacks; Jason D Buenrostro; Fei Chen
Journal:  Nature       Date:  2021-12-15       Impact factor: 69.504

Review 6.  Resolving genetic heterogeneity in cancer.

Authors:  Samra Turajlic; Andrea Sottoriva; Trevor Graham; Charles Swanton
Journal:  Nat Rev Genet       Date:  2019-07       Impact factor: 53.242

7.  RGB-Marking to Identify Patterns of Selection and Neutral Evolution in Human Osteosarcoma Models.

Authors:  Stefano Gambera; Ana Patiño-Garcia; Arantzazu Alfranca; Javier Garcia-Castro
Journal:  Cancers (Basel)       Date:  2021-04-21       Impact factor: 6.639

8.  Identifying CpG methylation signature as a promising biomarker for recurrence and immunotherapy in non-small-cell lung carcinoma.

Authors:  Ruihan Luo; Jing Song; Xiao Xiao; Zhengbo Xie; Zhiyuan Zhao; Wanfeng Zhang; Shiqi Miao; Yongyao Tang; Longke Ran
Journal:  Aging (Albany NY)       Date:  2020-07-28       Impact factor: 5.682

Review 9.  Melanoma plasticity and phenotypic diversity: therapeutic barriers and opportunities.

Authors:  Florian Rambow; Jean-Christophe Marine; Colin R Goding
Journal:  Genes Dev       Date:  2019-10-01       Impact factor: 11.361

10.  SREBP1-dependent de novo fatty acid synthesis gene expression is elevated in malignant melanoma and represents a cellular survival trait.

Authors:  Su Wu; Anders M Näär
Journal:  Sci Rep       Date:  2019-07-17       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.