Literature DB >> 32719518

Characterizing the ecological and evolutionary dynamics of cancer.

Nastaran Zahir1, Ruping Sun2,3, Daniel Gallahan1, Robert A Gatenby4, Christina Curtis5,6,7.   

Abstract

Tumor initiation and progression are somatic evolutionary processes driven by the accumulation of genetic alterations, some of which confer selective fitness advantages to the host cell. This gene-centric model has shaped the field of cancer biology and advanced understanding of cancer pathophysiology. Importantly, however, each genotype encodes diverse phenotypic traits that permit acclimation to varied microenvironmental conditions. Epigenetic and transcriptional changes also contribute to the heritable phenotypic variation required for evolution. Additionally, interactions between cancer cells and surrounding stromal and immune cells through autonomous and non-autonomous signaling can influence competition for survival. Therefore, a mechanistic understanding of tumor progression must account for evolutionary and ecological dynamics. In this Perspective, we outline technological advances and model systems to characterize tumor progression through space and time. We discuss the importance of unifying experimentation with computational modeling and opportunities to inform cancer control.

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Year:  2020        PMID: 32719518     DOI: 10.1038/s41588-020-0668-4

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  108 in total

1.  Studying clonal dynamics in response to cancer therapy using high-complexity barcoding.

Authors:  Hyo-eun C Bhang; David A Ruddy; Viveksagar Krishnamurthy Radhakrishna; Justina X Caushi; Rui Zhao; Matthew M Hims; Angad P Singh; Iris Kao; Daniel Rakiec; Pamela Shaw; Marissa Balak; Alina Raza; Elizabeth Ackley; Nicholas Keen; Michael R Schlabach; Michael Palmer; Rebecca J Leary; Derek Y Chiang; William R Sellers; Franziska Michor; Vesselina G Cooke; Joshua M Korn; Frank Stegmeier
Journal:  Nat Med       Date:  2015-04-13       Impact factor: 53.440

Review 2.  Mutations, evolution and the central role of a self-defined fitness function in the initiation and progression of cancer.

Authors:  Robert A Gatenby; Joel Brown
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-03-21       Impact factor: 10.680

3.  Comprehensive Characterization of Cancer Driver Genes and Mutations.

Authors:  Matthew H Bailey; Collin Tokheim; Eduard Porta-Pardo; Sohini Sengupta; Denis Bertrand; Amila Weerasinghe; Antonio Colaprico; Michael C Wendl; Jaegil Kim; Brendan Reardon; Patrick Kwok-Shing Ng; Kang Jin Jeong; Song Cao; Zixing Wang; Jianjiong Gao; Qingsong Gao; Fang Wang; Eric Minwei Liu; Loris Mularoni; Carlota Rubio-Perez; Niranjan Nagarajan; Isidro Cortés-Ciriano; Daniel Cui Zhou; Wen-Wei Liang; Julian M Hess; Venkata D Yellapantula; David Tamborero; Abel Gonzalez-Perez; Chayaporn Suphavilai; Jia Yu Ko; Ekta Khurana; Peter J Park; Eliezer M Van Allen; Han Liang; Michael S Lawrence; Adam Godzik; Nuria Lopez-Bigas; Josh Stuart; David Wheeler; Gad Getz; Ken Chen; Alexander J Lazar; Gordon B Mills; Rachel Karchin; Li Ding
Journal:  Cell       Date:  2018-04-05       Impact factor: 41.582

4.  The clonal evolution of tumor cell populations.

Authors:  P C Nowell
Journal:  Science       Date:  1976-10-01       Impact factor: 47.728

Review 5.  Clonal evolution in cancer.

Authors:  Mel Greaves; Carlo C Maley
Journal:  Nature       Date:  2012-01-18       Impact factor: 49.962

6.  Pre-existing Functional Heterogeneity of Tumorigenic Compartment as the Origin of Chemoresistance in Pancreatic Tumors.

Authors:  Sahil Seth; Chieh-Yuan Li; I-Lin Ho; Denise Corti; Sara Loponte; Luigi Sapio; Edoardo Del Poggetto; Er-Yen Yen; Frederick Scott Robinson; Michael Peoples; Tatiana Karpinets; Angela Kay Deem; Tapsi Kumar; Xingzhi Song; Shan Jiang; Ya'an Kang; Jason Fleming; Michael Kim; Jianhua Zhang; Anirban Maitra; Timothy Paul Heffernan; Virginia Giuliani; Giannicola Genovese; Andrew Futreal; Giulio Francesco Draetta; Alessandro Carugo; Andrea Viale
Journal:  Cell Rep       Date:  2019-02-05       Impact factor: 9.423

Review 7.  Harnessing Tumor Evolution to Circumvent Resistance.

Authors:  Katherine L Pogrebniak; Christina Curtis
Journal:  Trends Genet       Date:  2018-06-11       Impact factor: 11.639

8.  Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.

Authors:  Marco Gerlinger; Andrew J Rowan; Stuart Horswell; James Larkin; David Endesfelder; Eva Gronroos; Pierre Martinez; Nicholas Matthews; Aengus Stewart; Charles Swanton; M Math; Patrick Tarpey; Ignacio Varela; Benjamin Phillimore; Sharmin Begum; Neil Q McDonald; Adam Butler; David Jones; Keiran Raine; Calli Latimer; Claudio R Santos; Mahrokh Nohadani; Aron C Eklund; Bradley Spencer-Dene; Graham Clark; Lisa Pickering; Gordon Stamp; Martin Gore; Zoltan Szallasi; Julian Downward; P Andrew Futreal
Journal:  N Engl J Med       Date:  2012-03-08       Impact factor: 91.245

9.  A Big Bang model of human colorectal tumor growth.

Authors:  Andrea Sottoriva; Haeyoun Kang; Zhicheng Ma; Trevor A Graham; Matthew P Salomon; Junsong Zhao; Paul Marjoram; Kimberly Siegmund; Michael F Press; Darryl Shibata; Christina Curtis
Journal:  Nat Genet       Date:  2015-02-09       Impact factor: 38.330

10.  Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry.

Authors:  Daniel Schulz; Vito Riccardo Tomaso Zanotelli; Jana Raja Fischer; Denis Schapiro; Stefanie Engler; Xiao-Kang Lun; Hartland Warren Jackson; Bernd Bodenmiller
Journal:  Cell Syst       Date:  2017-12-27       Impact factor: 10.304

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  19 in total

Review 1.  Directed Evolution. The Legacy of a Nobel Prize.

Authors:  Konstantinos Voskarides
Journal:  J Mol Evol       Date:  2020-11-13       Impact factor: 2.395

2.  Tumor metabolism: metabolic alterations and heterogeneity in cancer progression.

Authors:  Anna Sebestyén
Journal:  Cancer Metastasis Rev       Date:  2021-12       Impact factor: 9.264

Review 3.  Dissecting cell fate dynamics in pediatric glioblastoma through the lens of complex systems and cellular cybernetics.

Authors:  Abicumaran Uthamacumaran
Journal:  Biol Cybern       Date:  2022-06-09       Impact factor: 3.072

Review 4.  Somatic Mutation: What Shapes the Mutational Landscape of Normal Epithelia?

Authors:  Joanna C Fowler; Philip H Jones
Journal:  Cancer Discov       Date:  2022-07-06       Impact factor: 38.272

5.  Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes.

Authors:  Stefan C Dentro; Ignaty Leshchiner; Kerstin Haase; Maxime Tarabichi; Jeff Wintersinger; Amit G Deshwar; Kaixian Yu; Yulia Rubanova; Geoff Macintyre; Jonas Demeulemeester; Ignacio Vázquez-García; Kortine Kleinheinz; Dimitri G Livitz; Salem Malikic; Nilgun Donmez; Subhajit Sengupta; Pavana Anur; Clemency Jolly; Marek Cmero; Daniel Rosebrock; Steven E Schumacher; Yu Fan; Matthew Fittall; Ruben M Drews; Xiaotong Yao; Thomas B K Watkins; Juhee Lee; Matthias Schlesner; Hongtu Zhu; David J Adams; Nicholas McGranahan; Charles Swanton; Gad Getz; Paul C Boutros; Marcin Imielinski; Rameen Beroukhim; S Cenk Sahinalp; Yuan Ji; Martin Peifer; Inigo Martincorena; Florian Markowetz; Ville Mustonen; Ke Yuan; Moritz Gerstung; Paul T Spellman; Wenyi Wang; Quaid D Morris; David C Wedge; Peter Van Loo
Journal:  Cell       Date:  2021-04-07       Impact factor: 41.582

6.  A Functional Taxonomy of Tumor Suppression in Oncogenic KRAS-Driven Lung Cancer.

Authors:  Hongchen Cai; Su Kit Chew; Chuan Li; Min K Tsai; Laura Andrejka; Christopher W Murray; Nicholas W Hughes; Emily G Shuldiner; Emily L Ashkin; Rui Tang; King L Hung; Leo C Chen; Shi Ya C Lee; Maryam Yousefi; Wen-Yang Lin; Christian A Kunder; Le Cong; Christopher D McFarland; Dmitri A Petrov; Charles Swanton; Monte M Winslow
Journal:  Cancer Discov       Date:  2021-02-19       Impact factor: 38.272

Review 7.  Reviving the Autopsy for Modern Cancer Evolution Research.

Authors:  Tamsin Joy Robb; Rexson Tse; Cherie Blenkiron
Journal:  Cancers (Basel)       Date:  2021-01-22       Impact factor: 6.639

Review 8.  The role of single-cell sequencing in studying tumour evolution.

Authors:  Maximilian Mossner; Ann-Marie C Baker; Trevor A Graham
Journal:  Fac Rev       Date:  2021-05-26

Review 9.  The Etiology and Pathophysiology Genesis of Benign Prostatic Hyperplasia and Prostate Cancer: A New Perspective.

Authors:  Teow J Phua
Journal:  Medicines (Basel)       Date:  2021-06-11

10.  Restoring the epigenetically silenced PCK2 suppresses renal cell carcinoma progression and increases sensitivity to sunitinib by promoting endoplasmic reticulum stress.

Authors:  Zhiyong Xiong; Changfei Yuan; Jian Shi; Wei Xiong; Yu Huang; Wen Xiao; Hongmei Yang; Ke Chen; Xiaoping Zhang
Journal:  Theranostics       Date:  2020-09-15       Impact factor: 11.556

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