Literature DB >> 22707911

Spatial structure increases the waiting time for cancer.

Erik A Martens1, Rumen Kostadinov, Carlo C Maley, Oskar Hallatschek.   

Abstract

Cancer results from a sequence of genetic and epigenetic changes which lead to a variety of abnormal phenotypes including increased proliferation and survival of somatic cells, and thus, to a selective advantage of pre-cancerous cells. The notion of cancer progression as an evolutionary process has been experiencing increasing interest in recent years. Many efforts have been made to better understand and predict the progression to cancer using mathematical models; these mostly consider the evolution of a well-mixed cell population, even though pre-cancerous cells often evolve in highly structured epithelial tissues. In this study, we propose a novel model of cancer progression that considers a spatially structured cell population where clones expand via adaptive waves. This model is used to assess two different paradigms of asexual evolution that have been suggested to delineate the process of cancer progression. The standard scenario of periodic selection assumes that driver mutations are accumulated strictly sequentially over time. However, when the mutation supply is sufficiently high, clones may arise simultaneously on distinct genetic backgrounds, and clonal adaptation waves interfere with each other. We find that in the presence of clonal interference, spatial structure increases the waiting time for cancer, leads to a patchwork structure of non-uniformly sized clones, decreases the survival probability of virtually neutral (passenger) mutations, and that genetic distance begins to increase over a characteristic length scale L(c). These characteristic features of clonal interference may help to predict the onset of cancers with pronounced spatial structure and to interpret spatially-sampled genetic data obtained from biopsies. Our estimates suggest that clonal interference likely occurs in the progression of colon cancer, and possibly other cancers where spatial structure matters.

Entities:  

Year:  2011        PMID: 22707911      PMCID: PMC3375912          DOI: 10.1088/1367-2630/13/11/115014

Source DB:  PubMed          Journal:  New J Phys        ISSN: 1367-2630            Impact factor:   3.729


  54 in total

1.  Genetic reconstruction of individual colorectal tumor histories.

Authors:  J L Tsao; Y Yatabe; R Salovaara; H J Järvinen; J P Mecklin; L A Aaltonen; S Tavaré; D Shibata
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

2.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

3.  Population risk and physiological rate parameters for colon cancer. The union of an explicit model for carcinogenesis with the public health records of the United States.

Authors:  P Herrero-Jimenez; A Tomita-Mitchell; E E Furth; S Morgenthaler; W G Thilly
Journal:  Mutat Res       Date:  2000-01-17       Impact factor: 2.433

4.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

5.  Methods for the determination of epithelial cell kinetic parameters of human colonic epithelium isolated from surgical and biopsy specimens.

Authors:  H Cheng; M Bjerknes; J Amar
Journal:  Gastroenterology       Date:  1984-01       Impact factor: 22.682

Review 6.  Cancer as an evolutionary and ecological process.

Authors:  Lauren M F Merlo; John W Pepper; Brian J Reid; Carlo C Maley
Journal:  Nat Rev Cancer       Date:  2006-11-16       Impact factor: 60.716

7.  The relationships between p53-dependent apoptosis, inhibition of proliferation, and 5-fluorouracil-induced histopathology in murine intestinal epithelia.

Authors:  D M Pritchard; C S Potten; J A Hickman
Journal:  Cancer Res       Date:  1998-12-01       Impact factor: 12.701

8.  Mutation and cancer: statistical study of retinoblastoma.

Authors:  A G Knudson
Journal:  Proc Natl Acad Sci U S A       Date:  1971-04       Impact factor: 11.205

9.  The stem cell population of the human colon crypt: analysis via methylation patterns.

Authors:  Pierre Nicolas; Kyoung-Mee Kim; Darryl Shibata; Simon Tavaré
Journal:  PLoS Comput Biol       Date:  2007-01-02       Impact factor: 4.475

10.  A two-stage theory of carcinogenesis in relation to the age distribution of human cancer.

Authors:  P ARMITAGE; R DOLL
Journal:  Br J Cancer       Date:  1957-06       Impact factor: 7.640

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  32 in total

Review 1.  Big Bang Tumor Growth and Clonal Evolution.

Authors:  Ruping Sun; Zheng Hu; Christina Curtis
Journal:  Cold Spring Harb Perspect Med       Date:  2018-05-01       Impact factor: 6.915

Review 2.  Cancer in light of experimental evolution.

Authors:  Kathleen Sprouffske; Lauren M F Merlo; Philip J Gerrish; Carlo C Maley; Paul D Sniegowski
Journal:  Curr Biol       Date:  2012-09-11       Impact factor: 10.834

Review 3.  Cutting through the complexity of cell collectives.

Authors:  Carey D Nadell; Vanni Bucci; Knut Drescher; Simon A Levin; Bonnie L Bassler; João B Xavier
Journal:  Proc Biol Sci       Date:  2013-01-30       Impact factor: 5.349

4.  Evolutionary shift dynamics on a cycle.

Authors:  Benjamin Allen; Martin A Nowak
Journal:  J Theor Biol       Date:  2012-07-16       Impact factor: 2.691

5.  Impact of tumor progression on cancer incidence curves.

Authors:  E Georg Luebeck; Kit Curtius; Jihyoun Jeon; William D Hazelton
Journal:  Cancer Res       Date:  2012-10-10       Impact factor: 12.701

Review 6.  A population genetics perspective on the determinants of intra-tumor heterogeneity.

Authors:  Zheng Hu; Ruping Sun; Christina Curtis
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-03-06       Impact factor: 10.680

Review 7.  Evolution of Premalignant Disease.

Authors:  Kit Curtius; Nicholas A Wright; Trevor A Graham
Journal:  Cold Spring Harb Perspect Med       Date:  2017-12-01       Impact factor: 6.915

Review 8.  An evolutionary perspective on field cancerization.

Authors:  Kit Curtius; Nicholas A Wright; Trevor A Graham
Journal:  Nat Rev Cancer       Date:  2017-12-08       Impact factor: 60.716

Review 9.  Harnessing Tumor Evolution to Circumvent Resistance.

Authors:  Katherine L Pogrebniak; Christina Curtis
Journal:  Trends Genet       Date:  2018-06-11       Impact factor: 11.639

10.  Spatial mutation patterns as markers of early colorectal tumor cell mobility.

Authors:  Marc D Ryser; Byung-Hoon Min; Kimberly D Siegmund; Darryl Shibata
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-14       Impact factor: 11.205

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