| Literature DB >> 29899000 |
Paul A Granato1, Melissa M Unz2, Raymond H Widen3, Suzane Silbert3, Stephen Young4, Kathryn L Heflin5, Matt S Conover5, Blake W Buchan6, Nathan A Ledeboer6.
Abstract
The iC-GPC Assay (iCubate, Huntsville, AL) is a qualitative multiplex test for the detection of five of the most common Gram-positive bacteria (Staphylococcus aureus, Staphylococcus epidermidis, Streptococcus pneumoniae, Enterococcus faecalis, and Enterococcus faecium) responsible for bacterial bloodstream infections, performed directly from positive blood cultures. The assay also detects the presence of the mecA, vanA, and vanB resistance determinants. This study comparatively evaluated the performance of the iC-GPC Assay against the Verigene Gram-positive blood culture (BC-GP) assay (Luminex Corp., Austin, TX) for 1,134 patient blood culture specimens positive for Gram-positive cocci. The iC-GPC Assay had an overall percent agreement with the BC-GP assay of 95.5%. Discordant specimens were further analyzed by PCR and a bidirectional sequencing method. The results indicate that the iC-GPC Assay together with the iCubate system is an accurate and reliable tool for the detection of the five most common Gram-positive bacteria and their resistance markers responsible for bloodstream infections.Entities:
Keywords: Gram-positive cocci; blood culture; iCubate; resistance genes
Mesh:
Year: 2018 PMID: 29899000 PMCID: PMC6113461 DOI: 10.1128/JCM.00485-18
Source DB: PubMed Journal: J Clin Microbiol ISSN: 0095-1137 Impact factor: 5.948
Comparative performance of iC-GPC Assay with Verigene method and resolution of discordant test results following PCR/sequencing arbitration testing
| Assay target ( | Sample type | % agreement, no. of samples/total no. (95% CI [%]) | Resolution of iC-GPC Assay discordant results after arbitration testing (no./total no.) | ||||
|---|---|---|---|---|---|---|---|
| Positive | Negative | FN | FP | TN | TP | ||
| Bacterial identification | |||||||
| | Overall | 97.0, 258/266 (94.2–98.5) | 99.8, 813/815 (99.1–99.9) | 8 | 2 | 1/8 | 1/2 |
| Prospective | 97.0, 258/266 (94.2–98.5) | 99.7, 645/647 (98.9–99.9) | 8 | 2 | 1/8 | 1/2 | |
| Simulated | NA, 0/0 (NA) | 100, 168/168 (97.8–100) | 0 | 0 | NA | NA | |
| | Overall | 98.3, 231/235 (95.7–99.3) | 98.3, 832/846 (97.2–99.0) | 4 | 14 | 1/4 | 9/14 |
| Prospective | 98.3, 231/235 (95.7–99.3) | 97.9, 664/678 (96.6–98.8) | 4 | 14 | 1/4 | 9/14 | |
| Simulated | NA, 0/0 (NA) | 100, 168/168 (97.8–100) | 0 | 0 | NA | NA | |
| | Overall | 93.7, 59/63 (84.8–97.5) | 99.9, 1,017/1,018 (99.5–100) | 4 | 1 | 4/4 | 1/1 |
| Prospective | 85.2, 23/27 (67.5–94.1) | 99.9, 885/886 (99.4–100) | 4 | 1 | 4/4 | 1/1 | |
| Simulated | 100, 36/36 (90.4–100) | 100, 132/132 (97.2–100) | 0 | 0 | NA | NA | |
| | Overall | 98.7, 149/151 (95.3–99.6) | 99.9, 929/930 (99.4–100) | 2 | 1 | 1/2 | 0/1 |
| Prospective | 96.7, 59/61 (88.8–99.1) | 99.9, 851/852 (99.4–100) | 2 | 1 | 1/2 | 0/1 | |
| Simulated | 100, 90/90 (95.9–100) | 100, 78/78 (95.3–100) | 0 | 0 | NA | NA | |
| | Overall | 98.6, 70/71 (92.4–99.8) | 99.8, 1,008/1,010 (99.3–100) | 1 | 2 | 0/1 | 1/2 |
| Prospective | 96.6, 28/29 (82.8–99.4) | 99.8, 882/884 (99.2–99.9) | 1 | 2 | 0/1 | 1/2 | |
| Simulated | 100, 42/42 (91.6–100) | 100, 126/126 (97.0–100) | 0 | 0 | NA | NA | |
| Resistance determinant | |||||||
| | Overall | 96.1, 274/285 (93.2–97.8) | 95.2, 216/227 (91.5–97.3) | 11 | 11 | 1/11 | 8/11 |
| Prospective | 96.1, 274/285 (93.2–97.8) | 95.2, 216/227 (91.5–97.3) | 11 | 11 | 1/11 | 8/11 | |
| Simulated | NA, 0/0 (NA) | NA, 0/0 (NA) | 0 | 0 | NA | NA | |
| | Overall | 98.3, 59/60 (91.1–99.7) | 96.9, 158/163 (93.0–98.7) | 1 | 5 | 0/1 | 2/5 |
| Prospective | 95, 19/20 (76.4–99.1) | 93.0, 66/71 (84.6–97.0) | 1 | 5 | 0/1 | 2/5 | |
| Simulated | 100, 40/40 (91.2–100) | 100, 92/92 (96.0–100) | 0 | 0 | NA | NA | |
| | Overall | 100, 58/58 (93.8–100) | 99.4, 163/164 (96.6–100) | 0 | 1 | NA | 1/1 |
| Prospective | 100, 2/2 (34.2–100) | 98.8, 87/88 (93.8–99.8) | 0 | 1 | NA | 1/1 | |
| Simulated | 100, 56/56 (93.6–100) | 100, 76/76 (95.2–100) | 0 | 0 | NA | NA | |
NA, not applicable; 95% CI, 95% confidence interval.
FN, false negative; FP, false positive; TN, true negative; TP, true positive.
One specimen not available for arbitration testing.
Comparative performances of prospective samples by blood culture bottle type
| Assay target ( | Bottle type | % agreement, no. of samples/total no. (95% CI [%]) | No. of results | ||
|---|---|---|---|---|---|
| Positive | Negative | FN | FP | ||
| BacT/Alert | 99.1, 116/117 (95.3–99.9) | 100, 279/279 (98.6–100) | 1 | 0 | |
| Bactec | 95.7, 88/92 (89.4–98.3) | 99.4, 155/156 (96.5–99.9) | 4 | 1 | |
| VersaTREK | 94.7, 54/57 (85.6–98.2) | 99.5, 211/212 (97.4–99.9) | 3 | 1 | |
| BacT/Alert | 98.8, 83/84 (93.6–99.8) | 98.1, 306/312 (95.9–99.1) | 1 | 6 | |
| Bactec | 95.5, 63/66 (87.5–98.4) | 98.9, 180/182 (96.1–99.7) | 3 | 2 | |
| VersaTREK | 100, 85/85 (95.7–100) | 96.7, 178/184 (93.1–98.5) | 0 | 6 | |
| BacT/Alert | 92.3, 12/13 (66.7–98.6) | 100, 383/383 (99.0–100) | 1 | 0 | |
| Bactec | 85.7, 6/7 (48.7–97.4) | 99.6, 240/241 (97.7–99.9) | 1 | 1 | |
| VersaTREK | 71.4, 5/7 (35.9–91.8) | 100, 262/262 (98.5–100) | 2 | 0 | |
| BacT/Alert | 96.6, 28/29 (82.8–99.4) | 99.7, 366/367 (98.5–100) | 1 | 1 | |
| Bactec | 83.3, 5/6 (43.7–97.0) | 100, 242/242 (98.4–100) | 1 | 0 | |
| VersaTREK | 100, 26/26 (87.1–100) | 100, 243/243 (98.4–100) | 0 | 0 | |
| BacT/Alert | 100, 6/6 (61.0–100) | 99.7, 389/390 (98.6–100) | 0 | 1 | |
| Bactec | 100, 1/1 (20.7–100) | 100, 247/247 (98.5–100) | 0 | 0 | |
| VersaTREK | 95.4, 21/22 (78.2–99.2) | 99.6, 246/247 (97.7–99.9) | 1 | 1 | |
| BacT/Alert | 99.1, 112/113 (95.2–99.8) | 91.4, 85/93 (83.9–95.6) | 1 | 8 | |
| Bactec | 92.6, 75/81 (84.8–96.6) | 100, 77/77 (95.3–100) | 6 | 0 | |
| VersaTREK | 95.6, 87/91 (89.2–98.3) | 94.7, 54/57 (85.6–98.2) | 4 | 3 | |
| BacT/Alert | 100, 4/4 (51.0–100) | 87.5, 28/32 (71.9–95.0) | 0 | 4 | |
| Bactec | 100, 1/1 (20.7–100) | 100, 5/5 (56.6–100) | 0 | 0 | |
| VersaTREK | 93.3, 14/15 (70.2–98.8) | 97.1, 33/34 (85.1–99.5) | 1 | 1 | |
| BacT/Alert | 100, 1/1 (20.7–100) | 97.1, 33/34 (85.1–99.5) | 0 | 1 | |
| Bactec | NA, 0/0 (NA) | 100, 6/6 (60.1–100) | 0 | 0 | |
| VersaTREK | 100, 1/1 (20.7–100) | 100, 47/47 (92.4–100) | 0 | 0 | |
NA, not applicable.
FN, false negative; FP, false positive.
Comparative performances of mixed-culture specimens
| iC-GPC Assay identification | Verigene BC-GP identification | Discrepant analysis results |
|---|---|---|
| NA | ||
| NA | ||
| NA | ||
| NA | ||
| NA |
NA, not applicable.