Literature DB >> 27028061

Ten years of R&D and full automation in molecular diagnosis.

Gilbert Greub1, Roland Sahli1, René Brouillet1, Katia Jaton1.   

Abstract

A 10-year experience of our automated molecular diagnostic platform that carries out 91 different real-time PCR is described. Progresses and future perspectives in molecular diagnostic microbiology are reviewed: why automation is important; how our platform was implemented; how homemade PCRs were developed; the advantages/disadvantages of homemade PCRs, including the critical aspects of troubleshooting and the need to further reduce the turnaround time for specific samples, at least for defined clinical settings such as emergencies. The future of molecular diagnosis depends on automation, and in a novel perspective, it is time now to fully acknowledge the true contribution of molecular diagnostic and to reconsider the indication for PCR, by also using these tests as first-line assays.

Entities:  

Keywords:  assay development; automation; flexibility; high-throughput tests; intracellular bacteria; molecular diagnosis; quality assessment; real-time PCR

Mesh:

Year:  2016        PMID: 27028061     DOI: 10.2217/fmb.15.152

Source DB:  PubMed          Journal:  Future Microbiol        ISSN: 1746-0913            Impact factor:   3.165


  22 in total

1.  Utility of Polymerase Chain Reaction in Nasopharyngeal Swabs for Identifying Respiratory Bacteria Causing Community-Acquired Pneumonia.

Authors:  Yoris Demars; Thomas Brahier; David C Rotzinger; René Brouillet; Katia Jaton; Onya Opota; Noémie Boillat-Blanco
Journal:  Microbiol Spectr       Date:  2022-05-18

2.  Size and duration of COVID-19 clusters go along with a high SARS-CoV-2 viral load: A spatio-temporal investigation in Vaud state, Switzerland.

Authors:  Anaïs Ladoy; Onya Opota; Pierre-Nicolas Carron; Idris Guessous; Séverine Vuilleumier; Stéphane Joost; Gilbert Greub
Journal:  Sci Total Environ       Date:  2021-05-15       Impact factor: 7.963

3.  Internal quality assurance in diagnostic microbiology: A simple approach for insightful data.

Authors:  Valentin Scherz; Christian Durussel; Gilbert Greub
Journal:  PLoS One       Date:  2017-11-14       Impact factor: 3.240

Review 4.  Diagnostic strategies for SARS-CoV-2 infection and interpretation of microbiological results.

Authors:  G Caruana; A Croxatto; A T Coste; O Opota; F Lamoth; K Jaton; G Greub
Journal:  Clin Microbiol Infect       Date:  2020-06-25       Impact factor: 8.067

5.  Added diagnostic value of 16S rRNA gene pan-mycobacterial PCR for nontuberculous mycobacterial infections: a 10-year retrospective study.

Authors:  Andenmatten Simon; Opota Onya; Jesica Mazza-Stalder; Laurent Nicod; Greub Gilbert; Jaton Katia
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2019-07-16       Impact factor: 3.267

6.  Minimizing carry-over PCR contamination in expanded CAG/CTG repeat instability applications.

Authors:  Lorène Aeschbach; Vincent Dion
Journal:  Sci Rep       Date:  2017-12-21       Impact factor: 4.379

7.  What is the true clinical relevance of Simkania negevensis and other emerging Chlamydiales members?

Authors:  M Vouga; C Kebbi-Beghdadi; J Liénard; L Baskin; D Baud; G Greub
Journal:  New Microbes New Infect       Date:  2018-01-31

8.  Clinical Evaluation of the iCubate iC-GPC Assay for Detection of Gram-Positive Bacteria and Resistance Markers from Positive Blood Cultures.

Authors:  Paul A Granato; Melissa M Unz; Raymond H Widen; Suzane Silbert; Stephen Young; Kathryn L Heflin; Matt S Conover; Blake W Buchan; Nathan A Ledeboer
Journal:  J Clin Microbiol       Date:  2018-08-27       Impact factor: 5.948

9.  Whole-genome sequencing for rapid, reliable and routine investigation of Mycobacterium tuberculosis transmission in local communities.

Authors:  F Zakham; S Laurent; A L Esteves Carreira; A Corbaz; C Bertelli; E Masserey; L Nicod; G Greub; K Jaton; J Mazza-Stalder; O Opota
Journal:  New Microbes New Infect       Date:  2019-06-29

10.  Letter to the editor: SARS-CoV-2 detection by real-time RT-PCR.

Authors:  Trestan Pillonel; Valentin Scherz; Katia Jaton; Gilbert Greub; Claire Bertelli
Journal:  Euro Surveill       Date:  2020-05
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