Literature DB >> 35472832

Advances and challenges in programming pattern formation using living cells.

Jia Lu1, Emrah Şimşek1, Anita Silver1, Lingchong You2.   

Abstract

Spatial patterning of cell populations is a ubiquitous phenomenon in nature. Patterns occur at various length and time scales and exhibit immense diversity. In addition to offering a deeper understanding of the emergence of patterns in nature, the ability to program synthetic patterns using living cells has the potential for broad applications. To date, however, progress in engineering pattern formation has been hampered by technical challenges. In this Review, we discuss recent advances in programming pattern formation in terms of biological insights, experimental and computational tool development, and potential applications.
Copyright © 2022 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Machine learning; Pattern formation; Reaction-diffusion models; Synthetic biology; Turing patterns

Mesh:

Year:  2022        PMID: 35472832      PMCID: PMC9158282          DOI: 10.1016/j.cbpa.2022.102147

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  59 in total

1.  Molecular-Level Tuning of Cellular Autonomy Controls the Collective Behaviors of Cell Populations.

Authors:  Théo Maire; Hyun Youk
Journal:  Cell Syst       Date:  2015-11-25       Impact factor: 10.304

2.  A theory of biological pattern formation.

Authors:  A Gierer; H Meinhardt
Journal:  Kybernetik       Date:  1972-12

Review 3.  Contextualizing context for synthetic biology--identifying causes of failure of synthetic biological systems.

Authors:  Stefano Cardinale; Adam Paul Arkin
Journal:  Biotechnol J       Date:  2012-05-31       Impact factor: 4.677

4.  Spatial Organization of Expanding Bacterial Colonies Is Affected by Contact-Dependent Growth Inhibition.

Authors:  Michael J Bottery; Ioannis Passaris; Calvin Dytham; A Jamie Wood; Marjan W van der Woude
Journal:  Curr Biol       Date:  2019-10-17       Impact factor: 10.834

Review 5.  Engineering organoids.

Authors:  Moritz Hofer; Matthias P Lutolf
Journal:  Nat Rev Mater       Date:  2021-02-19       Impact factor: 66.308

Review 6.  Applications, challenges, and needs for employing synthetic biology beyond the lab.

Authors:  Sierra M Brooks; Hal S Alper
Journal:  Nat Commun       Date:  2021-03-02       Impact factor: 14.919

7.  Collective colony growth is optimized by branching pattern formation in Pseudomonas aeruginosa.

Authors:  Nan Luo; Shangying Wang; Jia Lu; Xiaoyi Ouyang; Lingchong You
Journal:  Mol Syst Biol       Date:  2021-04       Impact factor: 11.429

8.  Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial Colonies.

Authors:  Salva Duran-Nebreda; Jordi Pla; Blai Vidiella; Jordi Piñero; Nuria Conde-Pueyo; Ricard Solé
Journal:  ACS Synth Biol       Date:  2021-01-15       Impact factor: 5.110

9.  Environmental and genetic determinants of colony morphology in yeast.

Authors:  Joshua A Granek; Paul M Magwene
Journal:  PLoS Genet       Date:  2010-01-22       Impact factor: 5.917

10.  Programming Escherichia coli to function as a digital display.

Authors:  Jonghyeon Shin; Shuyi Zhang; Bryan S Der; Alec Ak Nielsen; Christopher A Voigt
Journal:  Mol Syst Biol       Date:  2020-03       Impact factor: 11.429

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