Literature DB >> 12688905

Pattern formation inside bacteria: fluctuations due to the low copy number of proteins.

Martin Howard1, Andrew D Rutenberg.   

Abstract

We examine fluctuation effects due to the low copy number of proteins involved in pattern-forming dynamics within a bacterium. We focus on a stochastic model of the oscillating MinCDE protein system regulating accurate cell division in E. coli. We find that, for some parameter regions, the protein concentrations are low enough that fluctuations are essential for the generation of patterns. We also examine the role of fluctuations in constraining protein concentration levels.

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Year:  2003        PMID: 12688905     DOI: 10.1103/PhysRevLett.90.128102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  34 in total

1.  Intra- and intercellular fluctuations in Min-protein dynamics decrease with cell length.

Authors:  Elisabeth Fischer-Friedrich; Giovanni Meacci; Joe Lutkenhaus; Hugues Chaté; Karsten Kruse
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

Review 2.  Reaction-diffusion systems in intracellular molecular transport and control.

Authors:  Siowling Soh; Marta Byrska; Kristiana Kandere-Grzybowska; Bartosz A Grzybowski
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-07       Impact factor: 15.336

3.  Reaction rates for a generalized reaction-diffusion master equation.

Authors:  Stefan Hellander; Linda Petzold
Journal:  Phys Rev E       Date:  2016-01-19       Impact factor: 2.529

4.  Stochastic model for Soj relocation dynamics in Bacillus subtilis.

Authors:  Konstantin Doubrovinski; Martin Howard
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-05       Impact factor: 11.205

5.  An accelerated algorithm for discrete stochastic simulation of reaction-diffusion systems using gradient-based diffusion and tau-leaping.

Authors:  Wonryull Koh; Kim T Blackwell
Journal:  J Chem Phys       Date:  2011-04-21       Impact factor: 3.488

6.  The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation.

Authors:  Brian Drawert; Michael J Lawson; Linda Petzold; Mustafa Khammash
Journal:  J Chem Phys       Date:  2010-02-21       Impact factor: 3.488

7.  Reaction rates for mesoscopic reaction-diffusion kinetics.

Authors:  Stefan Hellander; Andreas Hellander; Linda Petzold
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-02-23

8.  Reaction rates for reaction-diffusion kinetics on unstructured meshes.

Authors:  Stefan Hellander; Linda Petzold
Journal:  J Chem Phys       Date:  2017-02-14       Impact factor: 3.488

9.  Cell shape dynamics in Escherichia coli.

Authors:  Galina Reshes; Sharon Vanounou; Itzhak Fishov; Mario Feingold
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

10.  A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formation.

Authors:  Satya Nanda Vel Arjunan; Masaru Tomita
Journal:  Syst Synth Biol       Date:  2009-12-10
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