Literature DB >> 29883623

Modeling asynchronous event sequences with RNNs.

Stephen Wu1, Sijia Liu2, Sunghwan Sohn2, Sungrim Moon2, Chung-Il Wi3, Young Juhn3, Hongfang Liu2.   

Abstract

Sequences of events have often been modeled with computational techniques, but typical preprocessing steps and problem settings do not explicitly address the ramifications of timestamped events. Clinical data, such as is found in electronic health records (EHRs), typically comes with timestamp information. In this work, we define event sequences and their properties: synchronicity, evenness, and co-cardinality; we then show how asynchronous, uneven, and multi-cardinal problem settings can support explicit accountings of relative time. Our evaluation uses the temporally sensitive clinical use case of pediatric asthma, which is a chronic disease with symptoms (and lack thereof) evolving over time. We show several approaches to explicitly incorporating relative time into a recurrent neural network (RNN) model that improve the overall classification of patients into those with no asthma, those with persistent asthma, those in long-term remission, and those who have experienced relapse. We also compare and contrast these results with those in an inpatient intensive care setting.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Asthma; Deep learning; Electronic health records; Temporal data

Mesh:

Year:  2018        PMID: 29883623      PMCID: PMC6103779          DOI: 10.1016/j.jbi.2018.05.016

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  26 in total

1.  Automated chart review for asthma cohort identification using natural language processing: an exploratory study.

Authors:  Stephen T Wu; Sunghwan Sohn; K E Ravikumar; Kavishwar Wagholikar; Siddhartha R Jonnalagadda; Hongfang Liu; Young J Juhn
Journal:  Ann Allergy Asthma Immunol       Date:  2013-08-12       Impact factor: 6.347

2.  Ascertainment of asthma prognosis using natural language processing from electronic medical records.

Authors:  Sunghwan Sohn; Chung-Il Wi; Stephen T Wu; Hongfang Liu; Euijung Ryu; Elizabeth Krusemark; Alicia Seabright; Gretchen A Voge; Young J Juhn
Journal:  J Allergy Clin Immunol       Date:  2018-02-10       Impact factor: 10.793

3.  Predicting In-Hospital Mortality of ICU Patients: The PhysioNet/Computing in Cardiology Challenge 2012.

Authors:  Ikaro Silva; George Moody; Daniel J Scott; Leo A Celi; Roger G Mark
Journal:  Comput Cardiol (2010)       Date:  2012

4.  Integration of early physiological responses predicts later illness severity in preterm infants.

Authors:  Suchi Saria; Anand K Rajani; Jeffrey Gould; Daphne Koller; Anna A Penn
Journal:  Sci Transl Med       Date:  2010-09-08       Impact factor: 17.956

5.  Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project.

Authors:  Susan Rea; Jyotishman Pathak; Guergana Savova; Thomas A Oniki; Les Westberg; Calvin E Beebe; Cui Tao; Craig G Parker; Peter J Haug; Stanley M Huff; Christopher G Chute
Journal:  J Biomed Inform       Date:  2012-02-04       Impact factor: 6.317

6.  Characteristics of children with asthma who achieved remission of asthma.

Authors:  Asma Javed; Kwang Ha Yoo; Kanishtha Agarwal; Robert M Jacobson; Xujian Li; Young J Juhn
Journal:  J Asthma       Date:  2013-04-30       Impact factor: 2.515

7.  Patient-level temporal aggregation for text-based asthma status ascertainment.

Authors:  Stephen T Wu; Young J Juhn; Sunghwan Sohn; Hongfang Liu
Journal:  J Am Med Inform Assoc       Date:  2014-05-15       Impact factor: 4.497

8.  Genome Wide Association Study to predict severe asthma exacerbations in children using random forests classifiers.

Authors:  Mousheng Xu; Kelan G Tantisira; Ann Wu; Augusto A Litonjua; Jen-hwa Chu; Blanca E Himes; Amy Damask; Scott T Weiss
Journal:  BMC Med Genet       Date:  2011-06-30       Impact factor: 2.103

Review 9.  Distinguishing Asthma Phenotypes Using Machine Learning Approaches.

Authors:  Rebecca Howard; Magnus Rattray; Mattia Prosperi; Adnan Custovic
Journal:  Curr Allergy Asthma Rep       Date:  2015-07       Impact factor: 4.806

10.  MIMIC-III, a freely accessible critical care database.

Authors:  Alistair E W Johnson; Tom J Pollard; Lu Shen; Li-Wei H Lehman; Mengling Feng; Mohammad Ghassemi; Benjamin Moody; Peter Szolovits; Leo Anthony Celi; Roger G Mark
Journal:  Sci Data       Date:  2016-05-24       Impact factor: 6.444

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  6 in total

1.  Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing.

Authors:  Sungrim Moon; Sijia Liu; Christopher G Scott; Sujith Samudrala; Mohamed M Abidian; Jeffrey B Geske; Peter A Noseworthy; Jane L Shellum; Rajeev Chaudhry; Steve R Ommen; Rick A Nishimura; Hongfang Liu; Adelaide M Arruda-Olson
Journal:  Int J Med Inform       Date:  2019-05-13       Impact factor: 4.046

2.  Informative presence and observation in routine health data: A review of methodology for clinical risk prediction.

Authors:  Rose Sisk; Lijing Lin; Matthew Sperrin; Jessica K Barrett; Brian Tom; Karla Diaz-Ordaz; Niels Peek; Glen P Martin
Journal:  J Am Med Inform Assoc       Date:  2021-01-15       Impact factor: 4.497

3.  Recurrent neural network models (CovRNN) for predicting outcomes of patients with COVID-19 on admission to hospital: model development and validation using electronic health record data.

Authors:  Laila Rasmy; Masayuki Nigo; Bijun Sai Kannadath; Ziqian Xie; Bingyu Mao; Khush Patel; Yujia Zhou; Wanheng Zhang; Angela Ross; Hua Xu; Degui Zhi
Journal:  Lancet Digit Health       Date:  2022-04-21

4.  Deep Learning-Based Method of Diagnosing Hyperlipidemia and Providing Diagnostic Markers Automatically.

Authors:  Yuliang Liu; Quan Zhang; Geng Zhao; Guohua Liu; Zhiang Liu
Journal:  Diabetes Metab Syndr Obes       Date:  2020-03-11       Impact factor: 3.168

5.  Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study.

Authors:  Yang Xiang; Hangyu Ji; Yujia Zhou; Fang Li; Jingcheng Du; Laila Rasmy; Stephen Wu; W Jim Zheng; Hua Xu; Degui Zhi; Yaoyun Zhang; Cui Tao
Journal:  J Med Internet Res       Date:  2020-07-31       Impact factor: 5.428

Review 6.  Influential Usage of Big Data and Artificial Intelligence in Healthcare.

Authors:  Yan Cheng Yang; Saad Ul Islam; Asra Noor; Sadia Khan; Waseem Afsar; Shah Nazir
Journal:  Comput Math Methods Med       Date:  2021-09-06       Impact factor: 2.238

  6 in total

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