Literature DB >> 2987800

Recent amplification of an alpha satellite DNA in humans.

K M Gray, J W White, C Costanzi, D Gillespie, W T Schroeder, B Calabretta, G F Saunders.   

Abstract

A repeat sequence 682 base pairs (bp) long produced by cleavage of human DNA with Xba I restriction enzyme is composed of four tandemly arranged subunits with lengths of 171, 170, 171, and 170 bp each. The sequence organization of the 682 bp Xba I repeat bears a striking resemblance to other complex satellite DNAs of primates, including the Eco RI human alpha satellite family which also occurs as a 170 bp repeat. The Eco RI tetramer and the 682 bp Xba I repeat show a sequence divergence of 21%. The 682 bp Xba I repeat sequence is restricted to humans and is only distantly related to the previously reported 340 bp Xba human repeated DNA sequence. These finding are consistent with the concept of occasional amplifications of members or groups of members of alpha satellite DNA during human evolution. Amplifications apparently occurred after humans, apes and gibbons diverged from Old World monkeys (Eco RI satellite), after humans and apes diverged from gibbons (340 bp Xba I satellite) and after humans diverged from the great apes (682 bp Xba I satellite).

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Year:  1985        PMID: 2987800      PMCID: PMC341012          DOI: 10.1093/nar/13.2.521

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

2.  Restriction site periodicities in highly repetitive DNA of primates.

Authors:  L Donehower; D Gillespie
Journal:  J Mol Biol       Date:  1979-11-15       Impact factor: 5.469

3.  Highly reiterated sequences of SIMIANSIMIANSIMIANSIMIANSIMIAN.

Authors:  H Rosenberg; M Singer; M Rosenberg
Journal:  Science       Date:  1978-04-28       Impact factor: 47.728

4.  Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.

Authors:  R J Britten; D E Kohne
Journal:  Science       Date:  1968-08-09       Impact factor: 47.728

5.  A ubiquitous family of repeated DNA sequences in the human genome.

Authors:  C M Houck; F P Rinehart; C W Schmid
Journal:  J Mol Biol       Date:  1979-08-15       Impact factor: 5.469

6.  New M13 vectors for cloning.

Authors:  J Messing
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

7.  Chromosomal localization of complex and simple repeated human DNAs.

Authors:  L Manuelidis
Journal:  Chromosoma       Date:  1978-03-22       Impact factor: 4.316

8.  Partial nucleotide sequence of the 300-nucleotide interspersed repeated human DNA sequences.

Authors:  C M Rubin; C M Houck; P L Deininger; T Friedmann; C W Schmid
Journal:  Nature       Date:  1980-03-27       Impact factor: 49.962

9.  The ovalbumin gene: alleles created by mutations in the intervening sequences of the natural gene.

Authors:  E C Lai; S L Woo; A Dugaiczyk; B W O'Malley
Journal:  Cell       Date:  1979-01       Impact factor: 41.582

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  24 in total

1.  Ecotype-specific and chromosome-specific expansion of variant centromeric satellites in Arabidopsis thaliana.

Authors:  Hidetaka Ito; Asuka Miura; Kazuya Takashima; Tetsuji Kakutani
Journal:  Mol Genet Genomics       Date:  2006-10-11       Impact factor: 3.291

2.  Comparative mapping of a gorilla-derived alpha satellite DNA clone on great ape and human chromosomes.

Authors:  A Baldini; D A Miller; V Shridhar; M Rocchi; O J Miller; D C Ward
Journal:  Chromosoma       Date:  1991-11       Impact factor: 4.316

Review 3.  Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code".

Authors:  P Vogt
Journal:  Hum Genet       Date:  1990-03       Impact factor: 4.132

4.  Definition of a second dimeric subfamily of human alpha satellite DNA.

Authors:  J D Thompson; J E Sylvester; I L Gonzalez; C C Costanzi; D Gillespie
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

5.  Chromosome-specific subsets of human alpha satellite DNA: analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat.

Authors:  H F Willard; J S Waye
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

6.  Organization and genomic distribution of "82H" alpha satellite DNA. Evidence for a low-copy or single-copy alphoid domain located on human chromosome 14.

Authors:  J S Waye; A R Mitchell; H F Willard
Journal:  Hum Genet       Date:  1988-01       Impact factor: 4.132

7.  A cloned sequence, p82H, of the alphoid repeated DNA family found at the centromeres of all human chromosomes.

Authors:  A R Mitchell; J R Gosden; D A Miller
Journal:  Chromosoma       Date:  1985       Impact factor: 4.316

8.  Sequence and evolution of rhesus monkey alphoid DNA.

Authors:  L M Pike; A Carlisle; C Newell; S B Hong; P R Musich
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

9.  Detection of restriction fragment length polymorphisms at the centromeres of human chromosomes by using chromosome-specific alpha satellite DNA probes: implications for development of centromere-based genetic linkage maps.

Authors:  H F Willard; J S Waye; M H Skolnick; C E Schwartz; V E Powers; S B England
Journal:  Proc Natl Acad Sci U S A       Date:  1986-08       Impact factor: 11.205

Review 10.  Human centromere genomics: now it's personal.

Authors:  Karen E Hayden
Journal:  Chromosome Res       Date:  2012-07       Impact factor: 5.239

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