Literature DB >> 22801774

Human centromere genomics: now it's personal.

Karen E Hayden1.   

Abstract

Advances in human genomics have accelerated studies in evolution, disease, and cellular regulation. However, centromere sequences, defining the chromosomal interface with spindle microtubules, remain largely absent from ongoing genomic studies and disconnected from functional, genome-wide analyses. This disparity results from the challenge of predicting the linear order of multi-megabase-sized regions that are composed almost entirely of near-identical satellite DNA. Acknowledging these challenges, the field of human centromere genomics possesses the potential to rapidly advance given the availability of individual, or personalized, genome projects matched with the promise of long-read sequencing technologies. Here I review the current genomic model of human centromeres in consideration of those studies involving functional datasets that examine the role of sequence in centromere identity.

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Year:  2012        PMID: 22801774     DOI: 10.1007/s10577-012-9295-y

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  62 in total

1.  Alpha-satellite DNA of primates: old and new families.

Authors:  I Alexandrov; A Kazakov; I Tumeneva; V Shepelev; Y Yurov
Journal:  Chromosoma       Date:  2001-08       Impact factor: 4.316

Review 2.  Conflict begets complexity: the evolution of centromeres.

Authors:  Harmit S Malik; Steven Henikoff
Journal:  Curr Opin Genet Dev       Date:  2002-12       Impact factor: 5.578

3.  Pulsed-field and two-dimensional gel electrophoresis of long arrays of tandemly repeated DNA : analysis of human centromeric alpha satellite.

Authors:  P E Warburton; R Wevrick; M M Mahtani; H F Willard
Journal:  Methods Mol Biol       Date:  1992

4.  Patterns of intra- and interarray sequence variation in alpha satellite from the human X chromosome: evidence for short-range homogenization of tandemly repeated DNA sequences.

Authors:  S J Durfy; H F Willard
Journal:  Genomics       Date:  1989-11       Impact factor: 5.736

5.  A human alphoid DNA clone from the EcoRI dimeric family: genomic and internal organization and chromosomal assignment.

Authors:  A Baldini; D I Smith; M Rocchi; O J Miller; D A Miller
Journal:  Genomics       Date:  1989-11       Impact factor: 5.736

6.  The phylogeny of human chromosome specific alpha satellites.

Authors:  I A Alexandrov; S P Mitkevich; Y B Yurov
Journal:  Chromosoma       Date:  1988       Impact factor: 4.316

7.  Physical map of the centromeric region of human chromosome 7: relationship between two distinct alpha satellite arrays.

Authors:  R Wevrick; H F Willard
Journal:  Nucleic Acids Res       Date:  1991-05-11       Impact factor: 16.971

8.  Repeating restriction fragments of human DNA.

Authors:  L Manuelidis
Journal:  Nucleic Acids Res       Date:  1976-11       Impact factor: 16.971

9.  Direct binding of Cenp-C to the Mis12 complex joins the inner and outer kinetochore.

Authors:  Emanuela Screpanti; Anna De Antoni; Gregory M Alushin; Arsen Petrovic; Tiziana Melis; Eva Nogales; Andrea Musacchio
Journal:  Curr Biol       Date:  2011-02-25       Impact factor: 10.834

10.  Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data.

Authors:  Can Alkan; Mario Ventura; Nicoletta Archidiacono; Mariano Rocchi; S Cenk Sahinalp; Evan E Eichler
Journal:  PLoS Comput Biol       Date:  2007-09       Impact factor: 4.475

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  21 in total

Review 1.  Completing the human genome: the progress and challenge of satellite DNA assembly.

Authors:  Karen H Miga
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

2.  Mapping the human reference genome's missing sequence by three-way admixture in Latino genomes.

Authors:  Giulio Genovese; Robert E Handsaker; Heng Li; Eimear E Kenny; Steven A McCarroll
Journal:  Am J Hum Genet       Date:  2013-08-08       Impact factor: 11.025

Review 3.  Noisy silence: non-coding RNA and heterochromatin formation at repetitive elements.

Authors:  Holger Bierhoff; Anna Postepska-Igielska; Ingrid Grummt
Journal:  Epigenetics       Date:  2013-10-11       Impact factor: 4.528

Review 4.  Transcription and ncRNAs: at the cent(rome)re of kinetochore assembly and maintenance.

Authors:  Kristin C Scott
Journal:  Chromosome Res       Date:  2013-12       Impact factor: 5.239

5.  α satellite DNA variation and function of the human centromere.

Authors:  Lori L Sullivan; Kimberline Chew; Beth A Sullivan
Journal:  Nucleus       Date:  2017-04-13       Impact factor: 4.197

Review 6.  "Reverse genomics" and human endogenous retroviruses.

Authors:  David M Markovitz
Journal:  Trans Am Clin Climatol Assoc       Date:  2014

7.  The Mi-2 homolog Mit1 actively positions nucleosomes within heterochromatin to suppress transcription.

Authors:  Kevin M Creamer; Godwin Job; Sreenath Shanker; Geoffrey A Neale; Yuan-chi Lin; Blaine Bartholomew; Janet F Partridge
Journal:  Mol Cell Biol       Date:  2014-03-24       Impact factor: 4.272

Review 8.  Epigenetic Regulation of Centromere Chromatin Stability by Dietary and Environmental Factors.

Authors:  Diego Hernández-Saavedra; Rita S Strakovsky; Patricia Ostrosky-Wegman; Yuan-Xiang Pan
Journal:  Adv Nutr       Date:  2017-11-15       Impact factor: 8.701

9.  Proliferation-dependent positioning of individual centromeres in the interphase nucleus of human lymphoblastoid cell lines.

Authors:  Jean Ollion; François Loll; Julien Cochennec; Thomas Boudier; Christophe Escudé
Journal:  Mol Biol Cell       Date:  2015-05-06       Impact factor: 4.138

10.  A satellite explosion in the genome of holocentric nematodes.

Authors:  Juan A Subirana; Xavier Messeguer
Journal:  PLoS One       Date:  2013-04-24       Impact factor: 3.240

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