Literature DB >> 17767232

Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function.

Joshua W Shaevitz1, Daniel A Fletcher.   

Abstract

We present a technique to systematically measure the change in the blurring function of an optical microscope with distance between the source and the coverglass (the depth) and demonstrate its utility in three-dimensional (3D) deconvolution. By controlling the axial positions of the microscope stage and an optically trapped bead independently, we can record the 3D blurring function at different depths. We find that the peak intensity collected from a single bead decreases with depth and that the width of the axial, but not the lateral, profile increases with depth. We present simple convolution and deconvolution algorithms that use the full depth-varying point-spread functions and use these to demonstrate a reduction of elongation artifacts in a reconstructed image of a 2 microm sphere.

Mesh:

Year:  2007        PMID: 17767232     DOI: 10.1364/josaa.24.002622

Source DB:  PubMed          Journal:  J Opt Soc Am A Opt Image Sci Vis        ISSN: 1084-7529            Impact factor:   2.129


  8 in total

1.  Optimal 3D single-molecule localization for superresolution microscopy with aberrations and engineered point spread functions.

Authors:  Sean Quirin; Sri Rama Prasanna Pavani; Rafael Piestun
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-30       Impact factor: 11.205

2.  Measure and model a 3-D space-variant PSF for fluorescence microscopy image deblurring.

Authors:  Yemeng Chen; Mengmeng Chen; Li Zhu; Jane Y Wu; Sidan Du; Yang Li
Journal:  Opt Express       Date:  2018-05-28       Impact factor: 3.894

3.  High-resolution imaging in two-photon excitation microscopy using in situ estimations of the point spread function.

Authors:  Atsushi Doi; Ryosuke Oketani; Yasunori Nawa; Katsumasa Fujita
Journal:  Biomed Opt Express       Date:  2017-12-13       Impact factor: 3.732

Review 4.  Image analysis in fluorescence microscopy: bacterial dynamics as a case study.

Authors:  Sven van Teeffelen; Joshua W Shaevitz; Zemer Gitai
Journal:  Bioessays       Date:  2012-03-13       Impact factor: 4.345

5.  High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing.

Authors:  P Kner; J W Sedat; D A Agard; Z Kam
Journal:  J Microsc       Date:  2010-02       Impact factor: 1.758

6.  Methods to calibrate and scale axial distances in confocal microscopy as a function of refractive index.

Authors:  T H Besseling; J Jose; A Van Blaaderen
Journal:  J Microsc       Date:  2014-12-01       Impact factor: 1.758

7.  Blind Depth-variant Deconvolution of 3D Data in Wide-field Fluorescence Microscopy.

Authors:  Boyoung Kim; Takeshi Naemura
Journal:  Sci Rep       Date:  2015-05-07       Impact factor: 4.379

8.  Development and experimental testing of an optical micro-spectroscopic technique incorporating true line-scan excitation.

Authors:  Gabriel Biener; Michael R Stoneman; Gheorghe Acbas; Jessica D Holz; Marianna Orlova; Liudmila Komarova; Sergei Kuchin; Valerică Raicu
Journal:  Int J Mol Sci       Date:  2013-12-27       Impact factor: 5.923

  8 in total

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