Literature DB >> 34302049

3D test sample for the calibration and quality control of stimulated emission depletion (STED) and confocal microscopes.

Ernest B van der Wee1,2, Jantina Fokkema1, Chris L Kennedy1, Marc Del Pozo1,3, D A Matthijs de Winter1,4, Peter N A Speets1,2, Hans C Gerritsen1, Alfons van Blaaderen5.   

Abstract

Multiple samples are required to monitor and optimize the quality and reliability of quantitative measurements of stimulated emission depletion (STED) and confocal microscopes. Here, we present a single sample to calibrate these microscopes, align their laser beams and measure their point spread function (PSF) in 3D. The sample is composed of a refractive index matched colloidal crystal of silica beads with fluorescent and gold cores. The microscopes can be calibrated in three dimensions using the periodicity of the crystal; the alignment of the laser beams can be checked using the reflection of the gold cores; and the PSF can be measured at multiple positions and depths using the fluorescent cores. It is demonstrated how this sample can be used to visualize and improve the quality of STED and confocal microscopy images. The sample is adjustable to meet the requirements of different NA objectives and microscopy techniques and additionally can be used to evaluate refractive index mismatches as a function of depth quantitatively.
© 2021. The Author(s).

Entities:  

Year:  2021        PMID: 34302049     DOI: 10.1038/s42003-021-02432-3

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  38 in total

1.  A workingperson's guide to deconvolution in light microscopy.

Authors:  W Wallace; L H Schaefer; J R Swedlow
Journal:  Biotechniques       Date:  2001-11       Impact factor: 1.993

2.  Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control.

Authors:  Richard W Cole; Tushare Jinadasa; Claire M Brown
Journal:  Nat Protoc       Date:  2011-11-10       Impact factor: 13.491

3.  Effects of primary aberrations on the fluorescence depletion patterns of STED microscopy.

Authors:  Suhui Deng; Li Liu; Ya Cheng; Ruxin Li; Zhizhan Xu
Journal:  Opt Express       Date:  2010-01-18       Impact factor: 3.894

Review 4.  Stimulated Emission Depletion Microscopy.

Authors:  Hans Blom; Jerker Widengren
Journal:  Chem Rev       Date:  2017-03-06       Impact factor: 60.622

5.  Measure and model a 3-D space-variant PSF for fluorescence microscopy image deblurring.

Authors:  Yemeng Chen; Mengmeng Chen; Li Zhu; Jane Y Wu; Sidan Du; Yang Li
Journal:  Opt Express       Date:  2018-05-28       Impact factor: 3.894

6.  STED super-resolved microscopy.

Authors:  Giuseppe Vicidomini; Paolo Bianchini; Alberto Diaspro
Journal:  Nat Methods       Date:  2018-01-29       Impact factor: 28.547

7.  Methods to calibrate and scale axial distances in confocal microscopy as a function of refractive index.

Authors:  T H Besseling; J Jose; A Van Blaaderen
Journal:  J Microsc       Date:  2014-12-01       Impact factor: 1.758

Review 8.  Aberrations and adaptive optics in super-resolution microscopy.

Authors:  Martin Booth; Débora Andrade; Daniel Burke; Brian Patton; Mantas Zurauskas
Journal:  Microscopy (Oxf)       Date:  2015-06-28       Impact factor: 1.571

9.  Microscope calibration using laser written fluorescence.

Authors:  Alexander D Corbett; Michael Shaw; Andrew Yacoot; Andrew Jefferson; Lothar Schermelleh; Tony Wilson; Martin Booth; Patrick S Salter
Journal:  Opt Express       Date:  2018-08-20       Impact factor: 3.894

10.  Real-time 3D single-molecule localization using experimental point spread functions.

Authors:  Yiming Li; Markus Mund; Philipp Hoess; Joran Deschamps; Ulf Matti; Bianca Nijmeijer; Vilma Jimenez Sabinina; Jan Ellenberg; Ingmar Schoen; Jonas Ries
Journal:  Nat Methods       Date:  2018-04-09       Impact factor: 28.547

View more
  1 in total

Review 1.  Recent advances in the standardization of fluorescence microscopy for quantitative image analysis.

Authors:  Akira Sasaki
Journal:  Biophys Rev       Date:  2021-11-16
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.