Literature DB >> 29875312

Fully automated, real-time 3D ultrasound segmentation to estimate first trimester placental volume using deep learning.

Pádraig Looney1, Gordon N Stevenson2, Kypros H Nicolaides3, Walter Plasencia4, Malid Molloholli5,6, Stavros Natsis5, Sally L Collins1,5.   

Abstract

We present a new technique to fully automate the segmentation of an organ from 3D ultrasound (3D-US) volumes, using the placenta as the target organ. Image analysis tools to estimate organ volume do exist but are too time consuming and operator dependant. Fully automating the segmentation process would potentially allow the use of placental volume to screen for increased risk of pregnancy complications. The placenta was segmented from 2,393 first trimester 3D-US volumes using a semiautomated technique. This was quality controlled by three operators to produce the "ground-truth" data set. A fully convolutional neural network (OxNNet) was trained using this ground-truth data set to automatically segment the placenta. OxNNet delivered state-of-the-art automatic segmentation. The effect of training set size on the performance of OxNNet demonstrated the need for large data sets. The clinical utility of placental volume was tested by looking at predictions of small-for-gestational-age babies at term. The receiver-operating characteristics curves demonstrated almost identical results between OxNNet and the ground-truth). Our results demonstrated good similarity to the ground-truth and almost identical clinical results for the prediction of SGA.

Keywords:  Diagnostic imaging; Obstetrics/gynecology; Reproductive Biology

Mesh:

Year:  2018        PMID: 29875312      PMCID: PMC6124436          DOI: 10.1172/jci.insight.120178

Source DB:  PubMed          Journal:  JCI Insight        ISSN: 2379-3708


  17 in total

1.  3-D Ultrasound Segmentation of the Placenta Using the Random Walker Algorithm: Reliability and Agreement.

Authors:  Gordon N Stevenson; Sally L Collins; Jane Ding; Lawrence Impey; J Alison Noble
Journal:  Ultrasound Med Biol       Date:  2015-09-01       Impact factor: 2.998

2.  Placental volume measured by three-dimensional ultrasound at 11 to 13 + 6 weeks of gestation: relation to chromosomal defects.

Authors:  P Wegrzyn; C Faro; O Falcon; C F A Peralta; K H Nicolaides
Journal:  Ultrasound Obstet Gynecol       Date:  2005-07       Impact factor: 7.299

3.  Placental volume at 11-13 weeks' gestation in the prediction of birth weight percentile.

Authors:  Walter Plasencia; Ranjit Akolekar; Themistoklis Dagklis; Alina Veduta; Kypros H Nicolaides
Journal:  Fetal Diagn Ther       Date:  2011-06-23       Impact factor: 2.587

4.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

5.  Volumetric determination of placental and uterine growth relationships from B-mode ultrasound by serial area-volume determinations.

Authors:  T B Jones; R R Price; S J Gibbs
Journal:  Invest Radiol       Date:  1981 Mar-Apr       Impact factor: 6.016

6.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

7.  Rapid calculation of standardized placental volume at 11 to 13 weeks and the prediction of small for gestational age babies.

Authors:  Sally L Collins; Gordon N Stevenson; J Alison Noble; Lawrence Impey
Journal:  Ultrasound Med Biol       Date:  2012-12-04       Impact factor: 2.998

8.  Screening for trisomy 21 by maternal age, fetal nuchal translucency thickness, free beta-human chorionic gonadotropin and pregnancy-associated plasma protein-A.

Authors:  K O Kagan; D Wright; A Baker; D Sahota; K H Nicolaides
Journal:  Ultrasound Obstet Gynecol       Date:  2008-06       Impact factor: 7.299

9.  Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation.

Authors:  Konstantinos Kamnitsas; Christian Ledig; Virginia F J Newcombe; Joanna P Simpson; Andrew D Kane; David K Menon; Daniel Rueckert; Ben Glocker
Journal:  Med Image Anal       Date:  2016-10-29       Impact factor: 8.545

10.  pROC: an open-source package for R and S+ to analyze and compare ROC curves.

Authors:  Xavier Robin; Natacha Turck; Alexandre Hainard; Natalia Tiberti; Frédérique Lisacek; Jean-Charles Sanchez; Markus Müller
Journal:  BMC Bioinformatics       Date:  2011-03-17       Impact factor: 3.307

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  12 in total

Review 1.  Artificial intelligence in diagnostic imaging: impact on the radiography profession.

Authors:  Maryann Hardy; Hugh Harvey
Journal:  Br J Radiol       Date:  2019-12-16       Impact factor: 3.039

2.  Gestational growth trajectories derived from a dynamic fetal-placental scaling law.

Authors:  Daniel Baller; Diana M Thomas; Kevin Cummiskey; Carl Bredlau; Nadav Schwartz; Kelly Orzechowski; Richard C Miller; Anthony Odibo; Ruchit Shah; Carolyn M Salafia
Journal:  J R Soc Interface       Date:  2019-10-30       Impact factor: 4.118

3.  Minimally interactive placenta segmentation from three-dimensional ultrasound images.

Authors:  Ipek Oguz; Natalie Yushkevich; Alison Pouch; Baris U Oguz; Jiancong Wang; Shobhana Parameshwaran; James Gee; Paul A Yushkevich; Nadav Schwartz
Journal:  J Med Imaging (Bellingham)       Date:  2020-02-22

4.  New Frontiers in Placenta Tissue Imaging.

Authors:  Christopher D Nguyen; Ana Correia-Branco; Nimish Adhikari; Ezgi Mercan; Srivalleesha Mallidi; Mary C Wallingford
Journal:  EMJ Radiol       Date:  2020-09

5.  Fully Automated Placental Volume Quantification From 3D Ultrasound for Prediction of Small-for-Gestational-Age Infants.

Authors:  Nadav Schwartz; Ipek Oguz; Jiancong Wang; Alison Pouch; Natalie Yushkevich; Shobhana Parameshwaran; James Gee; Paul Yushkevich; Baris Oguz
Journal:  J Ultrasound Med       Date:  2021-09-23       Impact factor: 2.754

Review 6.  Amniotic Fluid Classification and Artificial Intelligence: Challenges and Opportunities.

Authors:  Irfan Ullah Khan; Nida Aslam; Fatima M Anis; Samiha Mirza; Alanoud AlOwayed; Reef M Aljuaid; Razan M Bakr
Journal:  Sensors (Basel)       Date:  2022-06-17       Impact factor: 3.847

7.  Fully Automated 3-D Ultrasound Segmentation of the Placenta, Amniotic Fluid, and Fetus for Early Pregnancy Assessment.

Authors:  Padraig Looney; Yi Yin; Sally L Collins; Kypros H Nicolaides; Walter Plasencia; Malid Molloholli; Stavros Natsis; Gordon N Stevenson
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2021-05-25       Impact factor: 3.267

8.  Normative placental structure in pregnancy using quantitative Magnetic Resonance Imaging.

Authors:  Nickie Andescavage; Kushal Kapse; Yuan-Chiao Lu; Scott D Barnett; Marni Jacobs; Alexis C Gimovsky; Homa Ahmadzia; Jessica Quistorff; Catherine Lopez; Nicole Reinholdt Andersen; Dorothy Bulas; Catherine Limperopoulos
Journal:  Placenta       Date:  2021-07-31       Impact factor: 3.287

9.  Deep Learning strategies for Ultrasound in Pregnancy.

Authors:  Pedro H B Diniz; Yi Yin; Sally Collins
Journal:  Eur Med J Reprod Health       Date:  2020-08-25

10.  Artificial intelligence in musculoskeletal ultrasound imaging.

Authors:  YiRang Shin; Jaemoon Yang; Young Han Lee; Sungjun Kim
Journal:  Ultrasonography       Date:  2020-09-06
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