Literature DB >> 29874058

Extrinsic Tryptophans as NMR Probes of Allosteric Coupling in Membrane Proteins: Application to the A2A Adenosine Receptor.

Matthew T Eddy1,2, Zhan-Guo Gao3, Philip Mannes3, Nilkanth Patel2, Kenneth A Jacobson3, Vsevolod Katritch2, Raymond C Stevens2, Kurt Wüthrich1,4.   

Abstract

Tryptophan indole 15N-1H signals are well separated in nuclear magnetic resonance (NMR) spectra of proteins. Assignment of the indole 15N-1H signals therefore enables one to obtain site-specific information on complex proteins in supramacromolecular systems, even when extensive assignment of backbone 15N-1H resonances is challenging. Here we exploit the unique indole 15N-1H chemical shift by introducing extrinsic tryptophan reporter residues at judiciously chosen locations in a membrane protein for increased coverage of structure and function by NMR. We demonstrate this approach with three variants of the human A2A adenosine receptor (A2AAR), a class A G protein-coupled receptor, each containing a single extrinsic tryptophan near the receptor intracellular surface, in helix V, VI, or VII, respectively. We show that the native A2AAR global protein fold and ligand binding activity are preserved in these A2AAR variants. The indole 15N-1H signals from the extrinsic tryptophan reporter residues show different responses to variable efficacy of drugs bound to the receptor orthosteric cavity, and the indole 15N-1H chemical shift of the tryptophan introduced at the intracellular end of helix VI is sensitive to conformational changes resulting from interactions with a polypeptide from the carboxy terminus of the GαS intracellular partner protein. Introducing extrinsic tryptophans into proteins in complex supramolecular systems thus opens new avenues for NMR investigations in solution.

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Year:  2018        PMID: 29874058      PMCID: PMC6192543          DOI: 10.1021/jacs.8b03805

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

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Journal:  Biochem Biophys Res Commun       Date:  2009-01-22       Impact factor: 3.575

Review 2.  Drug efficacy at G protein-coupled receptors.

Authors:  Terry Kenakin
Journal:  Annu Rev Pharmacol Toxicol       Date:  2002       Impact factor: 13.820

3.  Allosteric Coupling of Drug Binding and Intracellular Signaling in the A2A Adenosine Receptor.

Authors:  Matthew T Eddy; Ming-Yue Lee; Zhan-Guo Gao; Kate L White; Tatiana Didenko; Reto Horst; Martin Audet; Pawel Stanczak; Kyle M McClary; Gye Won Han; Kenneth A Jacobson; Raymond C Stevens; Kurt Wüthrich
Journal:  Cell       Date:  2017-12-28       Impact factor: 41.582

4.  Structure of the human histamine H1 receptor complex with doxepin.

Authors:  Tatsuro Shimamura; Mitsunori Shiroishi; Simone Weyand; Hirokazu Tsujimoto; Graeme Winter; Vsevolod Katritch; Ruben Abagyan; Vadim Cherezov; Wei Liu; Gye Won Han; Takuya Kobayashi; Raymond C Stevens; So Iwata
Journal:  Nature       Date:  2011-06-22       Impact factor: 49.962

5.  On choosing a detergent for solution NMR studies of membrane proteins.

Authors:  O Vinogradova; F Sönnichsen; C R Sanders
Journal:  J Biomol NMR       Date:  1998-05       Impact factor: 2.835

6.  Robust NMR screening for lead compounds using tryptophan-containing proteins.

Authors:  Michal Bista; Kaja Kowalska; Weronika Janczyk; Alexander Dömling; Tad A Holak
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

7.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

8.  Evaluation of the Pichia pastoris expression system for the production of GPCRs for structural analysis.

Authors:  Hidetsugu Asada; Tomoko Uemura; Takami Yurugi-Kobayashi; Mitsunori Shiroishi; Tatsuro Shimamura; Hirokazu Tsujimoto; Keisuke Ito; Taishi Sugawara; Takanori Nakane; Norimichi Nomura; Takeshi Murata; Tatsuya Haga; So Iwata; Takuya Kobayashi
Journal:  Microb Cell Fact       Date:  2011-04-22       Impact factor: 5.328

9.  Crystal structure of the β2 adrenergic receptor-Gs protein complex.

Authors:  Søren G F Rasmussen; Brian T DeVree; Yaozhong Zou; Andrew C Kruse; Ka Young Chung; Tong Sun Kobilka; Foon Sun Thian; Pil Seok Chae; Els Pardon; Diane Calinski; Jesper M Mathiesen; Syed T A Shah; Joseph A Lyons; Martin Caffrey; Samuel H Gellman; Jan Steyaert; Georgios Skiniotis; William I Weis; Roger K Sunahara; Brian K Kobilka
Journal:  Nature       Date:  2011-07-19       Impact factor: 49.962

Review 10.  GPCRdb: the G protein-coupled receptor database - an introduction.

Authors:  C Munk; V Isberg; S Mordalski; K Harpsøe; K Rataj; A S Hauser; P Kolb; A J Bojarski; G Vriend; D E Gloriam
Journal:  Br J Pharmacol       Date:  2016-06-03       Impact factor: 8.739

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  15 in total

Review 1.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

Review 2.  Harnessing Ion-Binding Sites for GPCR Pharmacology.

Authors:  Barbara Zarzycka; Saheem A Zaidi; Bryan L Roth; Vsevolod Katritch
Journal:  Pharmacol Rev       Date:  2019-10       Impact factor: 25.468

3.  A2A adenosine receptor functional states characterized by 19F-NMR.

Authors:  Lukas Sušac; Matthew T Eddy; Tatiana Didenko; Raymond C Stevens; Kurt Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-21       Impact factor: 11.205

4.  A2A Adenosine Receptor Partial Agonism Related to Structural Rearrangements in an Activation Microswitch.

Authors:  Matthew T Eddy; Bryan T Martin; Kurt Wüthrich
Journal:  Structure       Date:  2020-11-24       Impact factor: 5.006

5.  Solution NMR spectroscopy of GPCRs: Residue-specific labeling strategies with a focus on 13C-methyl methionine labeling of the atypical chemokine receptor ACKR3.

Authors:  Andrew B Kleist; Francis Peterson; Robert C Tyler; Martin Gustavsson; Tracy M Handel; Brian F Volkman
Journal:  Methods Cell Biol       Date:  2018-11-15       Impact factor: 1.441

6.  Slow conformational dynamics of the human A2A adenosine receptor are temporally ordered.

Authors:  Shushu Wei; Naveen Thakur; Arka P Ray; Beining Jin; Samuel Obeng; Christopher R McCurdy; Lance R McMahon; Hugo Gutiérrez-de-Terán; Matthew T Eddy; Rajan Lamichhane
Journal:  Structure       Date:  2021-12-10       Impact factor: 5.006

Review 7.  Structural biology of human GPCR drugs and endogenous ligands - insights from NMR spectroscopy.

Authors:  Guillaume Ferré; Matthew T Eddy
Journal:  Methods       Date:  2020-09-08       Impact factor: 3.608

8.  Production of a Human Histamine Receptor for NMR Spectroscopy in Aqueous Solutions.

Authors:  Emma Mulry; Arka Prabha Ray; Matthew T Eddy
Journal:  Biomolecules       Date:  2021-04-24

Review 9.  Molecular Simulations and Drug Discovery of Adenosine Receptors.

Authors:  Jinan Wang; Apurba Bhattarai; Hung N Do; Sana Akhter; Yinglong Miao
Journal:  Molecules       Date:  2022-03-22       Impact factor: 4.411

Review 10.  Purinergic Signaling: Impact of GPCR Structures on Rational Drug Design.

Authors:  Veronica Salmaso; Kenneth A Jacobson
Journal:  ChemMedChem       Date:  2020-09-18       Impact factor: 3.540

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