Literature DB >> 34895472

Slow conformational dynamics of the human A2A adenosine receptor are temporally ordered.

Shushu Wei1, Naveen Thakur2, Arka P Ray2, Beining Jin2, Samuel Obeng3, Christopher R McCurdy4, Lance R McMahon5, Hugo Gutiérrez-de-Terán6, Matthew T Eddy7, Rajan Lamichhane8.   

Abstract

A more complete depiction of protein energy landscapes includes the identification of different function-related conformational states and the determination of the pathways connecting them. We used total internal reflection fluorescence (TIRF) imaging to investigate the conformational dynamics of the human A2A adenosine receptor (A2AAR), a class A G protein-coupled receptor (GPCR), at the single-molecule level. Slow, reversible conformational exchange was observed among three different fluorescence emission states populated for agonist-bound A2AAR. Transitions among these states predominantly occurred in a specific order, and exchange between inactive and active-like conformations proceeded through an intermediate state. Models derived from molecular dynamics simulations with available A2AAR structures rationalized the relative fluorescence emission intensities for the highest and lowest emission states but not the transition state. This suggests that the functionally critical intermediate state required to achieve activation is not currently visualized among available A2AAR structures.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  A2A adenosine receptor; G-protein-coupled receptors; TIRF; biophysics; conformational dynamics; lipid nanodiscs; membrane proteins; single-molecule fluorescence spectroscopy

Mesh:

Substances:

Year:  2021        PMID: 34895472      PMCID: PMC8897252          DOI: 10.1016/j.str.2021.11.005

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  50 in total

1.  Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy.

Authors:  Benjamin Schuler; Everett A Lipman; William A Eaton
Journal:  Nature       Date:  2002-10-17       Impact factor: 49.962

2.  MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories.

Authors:  Robert T McGibbon; Kyle A Beauchamp; Matthew P Harrigan; Christoph Klein; Jason M Swails; Carlos X Hernández; Christian R Schwantes; Lee-Ping Wang; Thomas J Lane; Vijay S Pande
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

3.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.

Authors:  Berk Hess; Carsten Kutzner; David van der Spoel; Erik Lindahl
Journal:  J Chem Theory Comput       Date:  2008-03       Impact factor: 6.006

4.  An iris-like mechanism of pore dilation in the CorA magnesium transport system.

Authors:  Nilmadhab Chakrabarti; Chris Neale; Jian Payandeh; Emil F Pai; Régis Pomès
Journal:  Biophys J       Date:  2010-03-03       Impact factor: 4.033

Review 5.  Membrane protein assembly into Nanodiscs.

Authors:  Timothy H Bayburt; Stephen G Sligar
Journal:  FEBS Lett       Date:  2009-10-16       Impact factor: 4.124

6.  Biased Signaling of the G-Protein-Coupled Receptor β2AR Is Governed by Conformational Exchange Kinetics.

Authors:  Rajan Lamichhane; Jeffrey J Liu; Kate L White; Vsevolod Katritch; Raymond C Stevens; Kurt Wüthrich; David P Millar
Journal:  Structure       Date:  2020-01-23       Impact factor: 5.006

7.  Improved Peptide and Protein Torsional Energetics with the OPLSAA Force Field.

Authors:  Michael J Robertson; Julian Tirado-Rives; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2015-07-14       Impact factor: 6.006

8.  PIP2 promotes conformation-specific dimerization of the EphA2 membrane region.

Authors:  Katherine M Stefanski; Charles M Russell; Justin M Westerfield; Rajan Lamichhane; Francisco N Barrera
Journal:  J Biol Chem       Date:  2020-12-10       Impact factor: 5.157

9.  Single-molecule view of coordination in a multi-functional DNA polymerase.

Authors:  Raymond F Pauszek; Rajan Lamichhane; Arishma Rajkarnikar Singh; David P Millar
Journal:  Elife       Date:  2021-03-11       Impact factor: 8.140

10.  Mechanistic insights into allosteric regulation of the A2A adenosine G protein-coupled receptor by physiological cations.

Authors:  Libin Ye; Chris Neale; Adnan Sljoka; Brent Lyda; Dmitry Pichugin; Nobuyuki Tsuchimura; Sacha T Larda; Régis Pomès; Angel E García; Oliver P Ernst; Roger K Sunahara; R Scott Prosser
Journal:  Nat Commun       Date:  2018-04-10       Impact factor: 14.919

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  2 in total

1.  Conformational fingerprinting of allosteric modulators in metabotropic glutamate receptor 2.

Authors:  Brandon Wey-Hung Liauw; Arash Foroutan; Michael R Schamber; Weifeng Lu; Hamid Samareh Afsari; Reza Vafabakhsh
Journal:  Elife       Date:  2022-07-01       Impact factor: 8.713

2.  A comparative study of interfacial environments in lipid nanodiscs and vesicles.

Authors:  Xiao You; Naveen Thakur; Arka Prabha Ray; Matthew T Eddy; Carlos R Baiz
Journal:  Biophys Rep (N Y)       Date:  2022-07-22
  2 in total

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