Literature DB >> 29870374

Photoacoustic Source Detection and Reflection Artifact Removal Enabled by Deep Learning.

Derek Allman, Austin Reiter, Muyinatu A Lediju Bell.   

Abstract

Interventional applications of photoacoustic imaging typically require visualization of point-like targets, such as the small, circular, cross-sectional tips of needles, catheters, or brachytherapy seeds. When these point-like targets are imaged in the presence of highly echogenic structures, the resulting photoacoustic wave creates a reflection artifact that may appear as a true signal. We propose to use deep learning techniques to identify these types of noise artifacts for removal in experimental photoacoustic data. To achieve this goal, a convolutional neural network (CNN) was first trained to locate and classify sources and artifacts in pre-beamformed data simulated with -Wave. Simulations initially contained one source and one artifact with various medium sound speeds and 2-D target locations. Based on 3,468 test images, we achieved a 100% success rate in classifying both sources and artifacts. After adding noise to assess potential performance in more realistic imaging environments, we achieved at least 98% success rates for channel signal-to-noise ratios (SNRs) of -9dB or greater, with a severe decrease in performance below -21dB channel SNR. We then explored training with multiple sources and two types of acoustic receivers and achieved similar success with detecting point sources. Networks trained with simulated data were then transferred to experimental waterbath and phantom data with 100% and 96.67% source classification accuracy, respectively (particularly when networks were tested at depths that were included during training). The corresponding mean ± one standard deviation of the point source location error was 0.40 ± 0.22 mm and 0.38 ± 0.25 mm for waterbath and phantom experimental data, respectively, which provides some indication of the resolution limits of our new CNN-based imaging system. We finally show that the CNN-based information can be displayed in a novel artifact-free image format, enabling us to effectively remove reflection artifacts from photoacoustic images, which is not possible with traditional geometry-based beamforming.

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Mesh:

Year:  2018        PMID: 29870374      PMCID: PMC6075868          DOI: 10.1109/TMI.2018.2829662

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  17 in total

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Journal:  J Biomed Opt       Date:  2013-07       Impact factor: 3.170

3.  In vivo visualization of prostate brachytherapy seeds with photoacoustic imaging.

Authors:  Muyinatu A Lediju Bell; Nathanael P Kuo; Danny Y Song; Jin U Kang; Emad M Boctor
Journal:  J Biomed Opt       Date:  2014-12       Impact factor: 3.170

Review 4.  Photoacoustic tomography: in vivo imaging from organelles to organs.

Authors:  Lihong V Wang; Song Hu
Journal:  Science       Date:  2012-03-23       Impact factor: 47.728

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Authors:  Paul Beard
Journal:  Interface Focus       Date:  2011-06-22       Impact factor: 3.906

Review 6.  Ultrasound-guided photoacoustic imaging: current state and future development.

Authors:  Richard Bouchard; Onur Sahin; Stanislav Emelianov
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2014-03       Impact factor: 2.725

7.  Transurethral light delivery for prostate photoacoustic imaging.

Authors:  Muyinatu A Lediju Bell; Xiaoyu Guo; Danny Y Song; Emad M Boctor
Journal:  J Biomed Opt       Date:  2015-03       Impact factor: 3.170

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Authors:  C G Hoelen; F F de Mul; R Pongers; A Dekker
Journal:  Opt Lett       Date:  1998-04-15       Impact factor: 3.776

9.  Identification and removal of laser-induced noise in photoacoustic imaging using singular value decomposition.

Authors:  Emma R Hill; Wenfeng Xia; Matthew J Clarkson; Adrien E Desjardins
Journal:  Biomed Opt Express       Date:  2016-12-05       Impact factor: 3.732

10.  Localization of Transcranial Targets for Photoacoustic-Guided Endonasal Surgeries.

Authors:  Muyinatu A Lediju Bell; Anastasia K Ostrowski; Ke Li; Peter Kazanzides; Emad M Boctor
Journal:  Photoacoustics       Date:  2015-06-09
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  36 in total

1.  Reflection artifact identification in photoacoustic imaging using multi-wavelength excitation.

Authors:  Ho Nhu Y Nguyen; Altaf Hussain; Wiendelt Steenbergen
Journal:  Biomed Opt Express       Date:  2018-09-04       Impact factor: 3.732

Review 2.  Photoacoustic-guided surgery from head to toe [Invited].

Authors:  Alycen Wiacek; Muyinatu A Lediju Bell
Journal:  Biomed Opt Express       Date:  2021-03-16       Impact factor: 3.732

3.  A Deep Learning Approach to Photoacoustic Wavefront Localization in Deep-Tissue Medium.

Authors:  Kerrick Johnstonbaugh; Sumit Agrawal; Deepit Abhishek Durairaj; Christopher Fadden; Ajay Dangi; Sri Phani Krishna Karri; Sri-Rajasekhar Kothapalli
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2020-11-24       Impact factor: 2.725

4.  Compressed sensing for photoacoustic computed tomography based on an untrained neural network with a shape prior.

Authors:  Hengrong Lan; Juze Zhang; Changchun Yang; Fei Gao
Journal:  Biomed Opt Express       Date:  2021-11-29       Impact factor: 3.732

5.  Improving Minimum Variance Beamforming with Sub-Aperture Processing for Photoacoustic Imaging.

Authors:  Rashid Al Mukaddim; Rifat Ahmed; Tomy Varghese
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2021-11

6.  Deep Learning-Based Spectral Unmixing for Optoacoustic Imaging of Tissue Oxygen Saturation.

Authors:  Ivan Olefir; Stratis Tzoumas; Courtney Restivo; Pouyan Mohajerani; Lei Xing; Vasilis Ntziachristos
Journal:  IEEE Trans Med Imaging       Date:  2020-10-28       Impact factor: 10.048

7.  Internal-Illumination Photoacoustic Tomography Enhanced by a Graded-Scattering Fiber Diffuser.

Authors:  Mucong Li; Tri Vu; Georgy Sankin; Brenton Winship; Kohldon Boydston; Russell Terry; Pei Zhong; Junjie Yao
Journal:  IEEE Trans Med Imaging       Date:  2020-12-29       Impact factor: 10.048

8.  Simultaneous Denoising and Localization Network for Photoacoustic Target Localization.

Authors:  Amirsaeed Yazdani; Sumit Agrawal; Kerrick Johnstonbaugh; Sri-Rajasekhar Kothapalli; Vishal Monga
Journal:  IEEE Trans Med Imaging       Date:  2021-08-31       Impact factor: 11.037

9.  Spatiotemporal Coherence Weighting for In Vivo Cardiac Photoacoustic Image Beamformation.

Authors:  Rashid Al Mukaddim; Tomy Varghese
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2021-02-25       Impact factor: 2.725

10.  Comparing Deep Learning Frameworks for Photoacoustic Tomography Image Reconstruction.

Authors:  Ko-Tsung Hsu; Steven Guan; Parag V Chitnis
Journal:  Photoacoustics       Date:  2021-05-15
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