| Literature DB >> 29850521 |
Pei Yu1, Siyu Hao1, Hewei Zheng2, Xueying Zhao2, Yuzhen Li1.
Abstract
AIM: To clarify the association between the single nucleotide polymorphisms (SNPs) in the NLRP1 and NLRP3 and Psoriasis Vulgaris (PsV) in the Chinese Han population.Entities:
Mesh:
Substances:
Year: 2018 PMID: 29850521 PMCID: PMC5903344 DOI: 10.1155/2018/4714836
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Flow chart depicting the process of SNP selection.
Characteristics of the study participants.
| Characteristic | Cases | Controls |
|
|---|---|---|---|
| Gender, | 0.062 | ||
| Male | 332 (61.5%) | 342 (55.9%) | |
| Female | 208 (38.5%) | 270 (44.1%) | |
| Age, mean ± SD | 44.23 ± 12.44 | 45.47 ± 12.73 | 0.238 |
| Age at onset, | |||
| ≤40 years | 439 (81.3%) | ||
| >40 years | 101 (18.7%) | ||
| PASI, | |||
| ≤10 | 446 (82.6%) | ||
| >10 | 94 (17.4%) | ||
| Family history, | |||
| Yes | 203 (37.6%) | ||
| No | 337 (62.4%) |
n, number; PASI, psoriasis area and severity index.
Candidate SNPs location and frequency characteristics on NLRP1 and NLRP3 gene.
| Gene | SNP | Chromosome position | Major/minor | Risk | Risk allele frequency | |
|---|---|---|---|---|---|---|
| Case | Control | |||||
|
| rs8079034 | 5509041 | C/T | C | 81.9% | 80.9% |
| rs11651270 | 5521757 | T/C | C | 24.3% | 23.7% | |
| rs11657747 | 5541923 | G/A | G/A | - | - | |
| rs878329 | 5649930 | G/C | G | 82.6% | 81.5% | |
|
| rs7512998 | 247419919 | T/C | C | 8.3% | 7.4% |
| rs3806265 | 247423034 | T/C | T | 56.5% | 50.7% | |
| rs10754557 | 247435930 | A/G | A | 74.1% | 69.1% | |
| rs10733113 | 247459055 | G/A | A | 6.1% | 4.9% | |
The single SNP association studies result of NLRP1 on the risk of PV.
| Genotype | Cases ( | Controls ( |
| Adjusted | Statistical model |
|
| OR (95% CI) |
|---|---|---|---|---|---|---|---|---|
| rs8079034 | ||||||||
| TT | 16 (3.0%) | 24 (3.9%) | Additive | 0.8171 | 0.8374 | |||
| TC | 164 (30.3%) | 186 (30.4%) | Dominant | 0.5288 | 0.6392 | 1.066 | ||
| CC | 360 (66.7%) | 402 (65.7%) | Recessive | 0.8040 | 0.8601 | (0.792,1.435) | ||
| T/C | 196/884 | 234/990 | 0.6732 | 0.7022 | Heterozygous | 0.9955 | 0.9998 | |
| 18.1%/81.9% | 19.1%/80.9% | |||||||
| rs11651270 | ||||||||
| TT | 302 (55.9%) | 360 (58.8%) | Additive | 0.3893 | 0.3873 | |||
| TC | 214 (39.6%) | 214 (35.0%) | Dominant | 0.4828 | 0.5006 | 1.032 | ||
| CC | 24 (4.4%) | 38 (6.2%) | Recessive | 0.3464 | 0.3666 | (0.787,1.353) | ||
| T/C | 818/262 | 934/290 | 0.8204 | 0.8320 | Heterozygous | 0.2480 | 0.2711 | |
| 75.7%/24.3% | 76.3%/23.7% | |||||||
| rs11657747 | ||||||||
| GG | 526 (97.4%) | 596 (97.4%) | Additive | - | 0.9999 | |||
| GA | 14 (2.6%) | 16 (2.6%) | Dominant | 0.9869 | 0.9998 | 0.992 | ||
| AA | 0 (0) | 0 (0) | Recessive | - | 0.9999 | (0.357,2.753) | ||
| G/A | 1066/14 | 1208/16 | 0.9869 | 0.9998 | Heterozygous | 0.9870 | 0.9999 | |
| 98.7%/1.3% | 98.7%/1.3% | |||||||
| rs878329 | ||||||||
| GG | 364 (67.4%) | 400 (65.3%) | Additive | 0.8724 | 0.8946 | |||
| GC | 164 (30.4%) | 198(32.4%) | Dominant | 0.60365 | 0.6660 | 0.931 | ||
| CC | 12 (2.2%) | 14 (2.3%) | Recessive | 0.9580 | 0.9999 | (0.688,1.259) | ||
| G/C | 892/188 | 998/226 | 0.62939 | 0.6359 | Heterozygous | 0.6089 | 0.6540 | |
| 82.6%/17.4% | 81.5%/18.5% |
N, number; p, model-based statistical p value; p′, p value adjusted by permutation; OR, odds ratio (we used the major allele as the reference allele to calculate the OR); 95% CI, 95% confidence interval.
The single SNP association studies result of NLRP3 on the risk of PV.
| Genotype | Cases ( | Controls ( |
| Adjusted | Statistical model |
|
| OR (95% CI) |
|---|---|---|---|---|---|---|---|---|
| rs7512998 | ||||||||
| TT | 450 (83.3%) | 524 (85.6%) | Additive | 0.3710 | 0.4540 | |||
| TC | 90 (16.7%) | 86 (14.1%) | Dominant | 0.4488 | 0.4969 | 1.146 | ||
| CC | 0 (0.0%) | 2 (0.3%) | Recessive | - | 0.9998 | (0.745,1.762) | ||
| T/C | 990/90 | 1134/90 | 0.5235 | 0.5760 | Heterozygous | 0.3846 | 0.4227 | |
| 91.7%/8.3% | 92.6%/7.4% | |||||||
| rs3806265 | ||||||||
| TT | 166 (30.8%) | 156 (25.5%) | Additive | 0.1191 | 0.1157 | |||
| TC | 278 (51.5%) | 308 (50.3%) | Dominant | 0.1614 | 0.1613 | 0.791 | ||
| CC | 96 (17.7%) | 144 (24.2%) | Recessive | 0.0595 | 0.0629 | (0.627,0.998) | ||
| T/C | 610/470 | 620/604 |
|
| Heterozygous | 0.7821 | 0.8072 | |
| 56.5%/43.5% | 50.7%/49.3% | |||||||
| rs10754557 | ||||||||
| GG | 40 (7.4%) | 52 (8.5%) | Additive | 0.1054 | 0.1019 | |||
| GA | 200 (37.0%) | 274 (44.8%) | Dominant | 0.6298 | 0.6516 | 1.277 | ||
| AA | 300 (55.6%) | 286 (46.7%) | Recessive |
|
| (0.987,1.652) | ||
| G/A | 360/800 | 378/846 | 0.0614 | 0.0655 | Heterozygous | 0.0595 | 0.0577 | |
| 25.9%/74.1% | 30.9%/69.1% | |||||||
| rs10733113 | ||||||||
| GG | 474 (87.8%) | 552 (90.2%) | Additive | - | 0.9999 | |||
| GA | 66 (12.2%) | 60 (9.8%) | Dominant | 0.3540 | 0.4282 | 1.263 | ||
| AA | 0 (0.0%) | 0 (0.0%) | Recessive | - | 0.9998 | (0.760,2.100) | ||
| G/A | 1014/66 | 1164/60 | 0.3540 | 0.4282 | Heterozygous | 0.3540 | 0.4282 | |
| 93.9%/6.1% | 95.1%/4.9% |
N, number; p, model-based statistical p value; p′, p value adjusted by permutation; OR, odds ratio (we used the major allele as the reference allele to calculate the OR); 95% CI, 95% confidence interval; ∗ indicates the significant association.
The haplotype-based association study of rs3806265 and rs10754557 SNPs in NLRP3 gene.
| Haplotype | Freq. | Case, control ratio counts | Case, control freqs. |
|
|
|---|---|---|---|---|---|
| TA | 50.7% | 291.9 : 248.1, 292.4 : 319.6 | 54.1%, 47.8% | 4.529 | 0.0333 |
| CG | 25.9% | 126.9 : 413.1, 171.4 : 440.6 | 23.5%, 28.0% | 3.031 | 0.0817 |
| CA | 20.7% | 108.1 : 431.9, 130.6 : 481.4 | 20.0%, 21.3% | 0.307 | 0.5797 |
| TG | 2.7% | 13.1 : 526.9, 17.6 : 594.4 | 2.4%, 2.9% | 0.227 | 0.6335 |
Freq., frequency; χ2, chi-square; p, p value.