Literature DB >> 29850101

Crystal structure of (4bS,8aR)-1-isopropyl-4b,8,8-trimethyl-7-oxo-4b,7,8,8a,9,10-hexa-hydro-phenanthren-2-yl acetate.

Yassine Laamari1, Moulay Youssef Ait Itto1, Abdelkhalek Riahi2, Sylviane Chevreux2, Aziz Auhmani1, El Mostafa Ketatni3.   

Abstract

The title compound, C22H28O3, was prepared by a direct acetyl-ation reaction of naturally occurring totarolenone. The mol-ecule contains three fused rings, which exhibit different conformations. The central ring has a half-chair conformation, while the non-aromatic oxo-substituted ring has a screw-boat conformation. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds and C-H⋯π inter-actions, forming sheets parallel to the bc plane. The carbonyl O atoms and the C atom at the 6-position of the cyclo-hexene ring are each disordered over two sets of sites with major occupancy components of 0.63 (7) and 0.793 (14), respectively.

Entities:  

Keywords:  C—H⋯O hydrogen bond; C—H⋯π inter­actions; crystal structure; natural product; phenanthrene

Year:  2018        PMID: 29850101      PMCID: PMC5947497          DOI: 10.1107/S2056989018005510

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Diterpene phenols are a family of natural products isolated from a variety of terrestrial plant sources. They exhibit a wide variety of inter­esting biological activities such as anti­tumour (Iwamoto et al., 2003 ▸; Son et al. 2005 ▸), anti­microbial (Yoshikawa et al., 2008 ▸; Pereda-Miranda et al., 1992 ▸), anti­viral (Yang et al., 2011 ▸; Wen et al., 2007 ▸) and anti-inflammatory (Chen et al. 2013 ▸). In addition, derivatives of diterpene phenol natural products have been studied extensively as potential chemotherapeutic agents (Areche et al., 2007 ▸; Yang et al. 2001 ▸). With the aim of preparing diterpene phenol derivatives, we report here the hemisynthesis (Fig. 1 ▸) of (4bS,8aR)-1-isopropyl-4 b,8,8-trimethyl-7-oxo-4 b,7,8,8a,9,10-hexa­hydro­phenanthren-2-yl acetate, 2, from naturally occurring totarolenone, 1, extracted from the heartwood of Tetra­clinis articulata (Chow et al., 1960 ▸). Treatment of 1 with acetic anhydride and pyridine provides compound 2 as colourless crystals in 88% yield. X-ray single crystal structure analysis allowed its structure to be confirmed unambiguously. Its structure was also characterized by 1H and 13C NMR measurements.
Figure 1

Reaction scheme for the synthesis of the title compound 2.

Structural commentary

The mol­ecular structure is built up from three fused six-membered rings (Fig. 2 ▸). In the mol­ecule, there are two chiral carbon atoms, C4b exhibits an S configuration and C8a exhibits an R configuration. The central six-membered ring (C4A, C4B, C8A, C9, C10, C10A) assumes a half-chair conformation, as indicated by the total puckering amplitude Q T = 0.55 (2) Å and spherical polar angle θ = 51.0 (2)° with φ = 136.0 (2)°. The major component of the cyclo­hexene ring exhibits a screw-boat conformation [Q T = 0.462 (2) Å, θ =113.7 (2)°, φ = 145.9 (2)°] while the minor component has a chair conformation [Q T = 0.558 (6) Å, θ =159.4 (6)°, φ = 235.6 (14)°].
Figure 2

The mol­ecular structure of the title compound with the atom-numbering scheme. The displacement ellipsoids are drawn at the 30% probability level. Only the major disorder components are shown.

Supra­molecular features

In the crystal, mol­ecules are linked by C—H⋯O and C—H⋯π inter­actions, forming layers parallel to the bc plane (Table 1 ▸ and Fig. 3 ▸).
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O1i 0.952.503.411 (10)159
C4—H4⋯O1A i 0.952.553.428 (17)154
C10—H10B⋯O1A ii 0.992.553.328 (17)136
C13—H13C⋯O3iii 0.982.593.530 (2)161
C18—H18ACg1iv 0.982.553.504 (2)165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 3

A view along the a axis of the crystal packing of the title compound, showing the C—H⋯O hydrogen bonds (orange dashed lines) and C—H⋯π inter­actions (green dashed lines). For clarity, only the H atoms involved in these inter­actions have been included.

Database survey

A search of the Cambridge Structural Database using the 1,2,3,4,4a,9,10,10a-hexa­hydro­phenanthren ring system (Fig. 4 ▸ a) as the main skeleton, revealed the presence of 75 structures. These include several compounds similar to the title compound. One with a similar conformation has a hydroxyl substituent in place of the acetate in the title compound (Benharref et al., 2011 ▸), and three others have a meth­oxy group in position 4b and carbaldehyde/benzene­sulfono­hydrazide (Vo et al., 2008 ▸) or bi­phenyl­sulfonyl (Gu & You, 2011 ▸) in position 9 (Fig. 4 ▸ b), while six entries (Oubabi et al., 2014a ▸,b ▸; Zeroual et al., 2007 ▸, 2008 ▸; Cutfield et al., 1974 ▸; Pettit et al., 2004 ▸) have 1-isopropyl-4b,8,8-trimethyl substit­uents (Fig. 4 ▸ c).
Figure 4

The core structures for database survey: (a) 1,2,3,4,4a,9,10,10a-hexa­hydro­phenanthren, and its (b) 7-oxo with double bond between C5 and C6, (c) 1-isopropyl-4 b,8,8-trimethyl substituents; and (d) the title compound.

Synthesis and crystallization

A solution of totarolenone 1 (300 mg, 1.041 mmol) in acetic anhydride (10 mL) and sodium acetate (290 mg) was heated under reflux for 24 h. After cooling, the solution was extracted with ether (3 × 20 mL). The organic layer was washed with water, dried on anhydrous Na2SO4 and evaporated under reduced pressure. The obtained residue was chromatographed on silica gel column using hexane and ethyl acetate (95/5) as eluent, to give compound 2.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms were placed in calculated positions and refined in the riding model: C—H = 0.95–1.00 Å with U iso(H) = 1.2U eq(C) or 1.5U eq(C-methyl). The carbonyl O atom is disordered over two sites having occupancies of 0.63 (7) and 0.37 (7). Atom C6 atom of the cyclo­hexene ring is disordered over two sites with an occupancy ratio of 0.793 (14):0.207 (14). The absolute structure was reliably determined based on the value of the Flack parameter [0.02 (5)].
Table 2

Experimental details

Crystal data
Chemical formulaC22H28O3
M r 340.44
Crystal system, space groupMonoclinic, P21
Temperature (K)100
a, b, c (Å)7.4103 (2), 10.4681 (3), 12.8121 (3)
β (°)102.235 (1)
V3)971.28 (4)
Z 2
Radiation typeCu Kα
μ (mm−1)0.60
Crystal size (mm)0.41 × 0.30 × 0.18
 
Data collection
DiffractometerD8 Venture CMOS area detector
Absorption correctionNumerical (SADABS; Bruker, 2012)
No. of measured, independent and observed [I > 2σ(I)] reflections17946, 3909, 3852
R int 0.029
(sin θ/λ)max−1)0.625
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.030, 0.077, 1.05
No. of reflections3909
No. of parameters252
No. of restraints1
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.16, −0.17
Absolute structureFlack x determined using 1757 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013)
Absolute structure parameter0.02 (5)

Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS2014 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg et al., 2012 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989018005510/xu5922sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018005510/xu5922Isup2.hkl CCDC reference: 1835842 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H28O3F(000) = 368
Mr = 340.44Dx = 1.164 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
a = 7.4103 (2) ÅCell parameters from 3909 reflections
b = 10.4681 (3) Åθ = 3.5–74.5°
c = 12.8121 (3) ŵ = 0.60 mm1
β = 102.235 (1)°T = 100 K
V = 971.28 (4) Å3Block, colourless
Z = 20.41 × 0.30 × 0.18 mm
D8 Venture CMOS area detector diffractometer3852 reflections with I > 2σ(I)
Radiation source: microsourceRint = 0.029
φ and ω scansθmax = 74.5°, θmin = 3.5°
Absorption correction: numerical (SADABS; Bruker, 2012)h = −9→9
k = −13→13
17946 measured reflectionsl = −16→15
3909 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.0376P)2 + 0.2106P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.077(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.16 e Å3
3909 reflectionsΔρmin = −0.17 e Å3
252 parametersAbsolute structure: Flack x determined using 1757 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
1 restraintAbsolute structure parameter: 0.02 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
O20.31864 (16)−0.17015 (11)0.35741 (9)0.0169 (2)
O30.57128 (17)−0.12685 (12)0.48549 (10)0.0228 (3)
C10.1762 (2)0.03631 (15)0.31947 (13)0.0149 (3)
C20.3194 (2)−0.04717 (15)0.31317 (12)0.0141 (3)
C30.4591 (2)−0.01616 (16)0.26178 (12)0.0165 (3)
H30.5532−0.07640.25750.020*
C40.4606 (2)0.10335 (17)0.21673 (12)0.0160 (3)
H40.55710.12530.18170.019*
C4A0.3228 (2)0.19262 (15)0.22171 (12)0.0140 (3)
C4B0.3352 (2)0.32561 (16)0.17177 (13)0.0167 (3)
C50.3964 (3)0.31576 (18)0.06569 (14)0.0242 (4)
H50.47470.24760.05440.029*
C70.2283 (3)0.5140 (2)−0.00216 (14)0.0262 (4)
C80.1175 (3)0.51452 (17)0.08559 (13)0.0217 (4)
C8A0.1410 (2)0.38675 (17)0.14900 (12)0.0166 (3)
H8A0.05950.32430.10210.020*
C90.0693 (2)0.39088 (17)0.25247 (13)0.0195 (3)
H9A0.16180.43250.30950.023*
H9B−0.04610.44150.24130.023*
C100.0326 (2)0.25550 (16)0.28606 (13)0.0181 (3)
H10A0.02040.25690.36150.022*
H10B−0.08660.22600.24230.022*
C10A0.1817 (2)0.16011 (16)0.27480 (12)0.0143 (3)
C11−0.0867 (3)0.5279 (2)0.02894 (17)0.0308 (4)
H11A−0.10380.6076−0.01220.046*
H11B−0.16390.52940.08230.046*
H11C−0.12230.4554−0.01940.046*
C120.1723 (4)0.63433 (19)0.15482 (19)0.0409 (6)
H12A0.14630.71080.11010.061*
H12B0.30440.63100.18740.061*
H12C0.10110.63740.21110.061*
C130.4868 (3)0.40095 (19)0.24898 (16)0.0252 (4)
H13A0.50140.48540.21880.038*
H13B0.60390.35430.25920.038*
H13C0.45110.41090.31800.038*
C140.0212 (2)−0.00178 (18)0.37495 (14)0.0220 (4)
H14−0.07890.06310.35380.026*
C150.0844 (3)0.0071 (3)0.49646 (16)0.0347 (5)
H15A0.1850−0.05380.52090.052*
H15B−0.0193−0.01320.53000.052*
H15C0.12800.09390.51630.052*
C16−0.0662 (3)−0.1325 (2)0.3410 (2)0.0352 (5)
H16A−0.0992−0.13730.26290.053*
H16B−0.1774−0.14330.37010.053*
H16C0.0224−0.20030.36850.053*
C170.4501 (2)−0.19878 (16)0.44565 (13)0.0165 (3)
C180.4186 (3)−0.32928 (18)0.48463 (16)0.0285 (4)
H18A0.5095−0.34690.55060.043*
H18B0.4316−0.39240.43020.043*
H18C0.2939−0.33440.49880.043*
C60.3407 (7)0.4028 (4)−0.0124 (3)0.0322 (13)0.793 (14)
H60.37740.3905−0.07840.039*0.793 (14)
C6A0.4227 (16)0.4506 (11)0.0182 (8)0.014 (3)0.207 (14)
H6A0.53350.48610.00470.017*0.207 (14)
O10.222 (3)0.6074 (7)−0.0588 (15)0.040 (3)0.63 (7)
O1A0.185 (3)0.575 (6)−0.084 (3)0.059 (7)0.37 (7)
U11U22U33U12U13U23
O20.0188 (5)0.0125 (5)0.0173 (5)−0.0001 (4)−0.0009 (4)0.0017 (4)
O30.0257 (6)0.0197 (6)0.0195 (6)−0.0038 (5)−0.0032 (5)0.0020 (5)
C10.0147 (7)0.0179 (8)0.0122 (7)0.0008 (6)0.0026 (6)0.0017 (6)
C20.0173 (8)0.0117 (7)0.0116 (7)−0.0003 (6)−0.0006 (6)0.0008 (6)
C30.0167 (7)0.0189 (8)0.0139 (7)0.0058 (6)0.0028 (6)−0.0016 (6)
C40.0153 (8)0.0205 (8)0.0131 (7)0.0004 (6)0.0050 (6)−0.0002 (6)
C4A0.0182 (8)0.0139 (7)0.0095 (7)0.0002 (6)0.0022 (6)0.0000 (6)
C4B0.0233 (8)0.0145 (7)0.0135 (7)−0.0003 (6)0.0067 (6)0.0014 (6)
C50.0375 (10)0.0191 (8)0.0201 (8)0.0019 (8)0.0153 (7)0.0021 (7)
C70.0286 (9)0.0265 (9)0.0229 (8)−0.0030 (8)0.0040 (7)0.0099 (8)
C80.0302 (9)0.0153 (8)0.0193 (8)0.0023 (7)0.0043 (7)0.0048 (7)
C8A0.0248 (8)0.0129 (7)0.0124 (7)0.0018 (6)0.0043 (6)0.0017 (6)
C90.0277 (9)0.0150 (7)0.0178 (8)0.0080 (7)0.0095 (6)0.0019 (6)
C100.0223 (8)0.0177 (8)0.0166 (8)0.0066 (6)0.0093 (6)0.0047 (6)
C10A0.0173 (7)0.0152 (7)0.0105 (7)0.0031 (6)0.0030 (6)0.0009 (5)
C110.0303 (10)0.0309 (10)0.0317 (10)0.0100 (8)0.0074 (8)0.0162 (8)
C120.0713 (17)0.0125 (9)0.0354 (11)0.0019 (9)0.0030 (11)0.0015 (8)
C130.0272 (9)0.0194 (8)0.0287 (9)−0.0055 (7)0.0053 (7)0.0001 (7)
C140.0174 (8)0.0239 (9)0.0272 (9)0.0060 (7)0.0103 (7)0.0119 (7)
C150.0367 (11)0.0482 (12)0.0249 (9)0.0116 (10)0.0192 (8)0.0138 (9)
C160.0174 (8)0.0298 (11)0.0587 (13)−0.0018 (8)0.0084 (8)0.0144 (10)
C170.0203 (8)0.0149 (8)0.0139 (7)0.0044 (6)0.0025 (6)0.0001 (6)
C180.0363 (11)0.0171 (9)0.0273 (10)−0.0016 (8)−0.0037 (8)0.0071 (7)
C60.048 (3)0.0312 (18)0.0220 (14)0.0010 (19)0.0181 (16)0.0045 (13)
C6A0.014 (5)0.016 (5)0.014 (4)−0.010 (4)0.004 (4)0.001 (4)
O10.042 (5)0.033 (3)0.051 (4)0.010 (2)0.026 (3)0.028 (2)
O1A0.033 (5)0.095 (17)0.048 (8)0.014 (7)0.012 (5)0.055 (9)
O2—C171.360 (2)C9—H9A0.9900
O2—C21.4071 (19)C9—H9B0.9900
O3—C171.200 (2)C10—C10A1.519 (2)
C1—C21.390 (2)C10—H10A0.9900
C1—C10A1.421 (2)C10—H10B0.9900
C1—C141.526 (2)C11—H11A0.9800
C2—C31.378 (2)C11—H11B0.9800
C3—C41.379 (2)C11—H11C0.9800
C3—H30.9500C12—H12A0.9800
C4—C4A1.396 (2)C12—H12B0.9800
C4—H40.9500C12—H12C0.9800
C4A—C10A1.404 (2)C13—H13A0.9800
C4A—C4B1.543 (2)C13—H13B0.9800
C4B—C51.525 (2)C13—H13C0.9800
C4B—C8A1.545 (2)C14—C151.531 (3)
C4B—C131.546 (2)C14—C161.537 (3)
C5—C61.352 (3)C14—H141.0000
C5—C6A1.565 (11)C15—H15A0.9800
C5—H50.9500C15—H15B0.9800
C7—O11.213 (10)C15—H15C0.9800
C7—O1A1.215 (16)C16—H16A0.9800
C7—C61.453 (4)C16—H16B0.9800
C7—C81.526 (3)C16—H16C0.9800
C7—C6A1.557 (9)C17—C181.490 (2)
C8—C111.540 (3)C18—H18A0.9800
C8—C121.540 (3)C18—H18B0.9800
C8—C8A1.556 (2)C18—H18C0.9800
C8A—C91.530 (2)C6—H60.9500
C8A—H8A1.0000C6A—H6A0.9500
C9—C101.522 (2)
C17—O2—C2118.24 (12)C4A—C10A—C1120.28 (14)
C2—C1—C10A117.54 (14)C4A—C10A—C10121.20 (14)
C2—C1—C14121.45 (14)C1—C10A—C10118.53 (14)
C10A—C1—C14120.98 (14)C8—C11—H11A109.5
C3—C2—C1122.65 (15)C8—C11—H11B109.5
C3—C2—O2118.38 (14)H11A—C11—H11B109.5
C1—C2—O2118.92 (14)C8—C11—H11C109.5
C2—C3—C4119.16 (15)H11A—C11—H11C109.5
C2—C3—H3120.4H11B—C11—H11C109.5
C4—C3—H3120.4C8—C12—H12A109.5
C3—C4—C4A121.16 (15)C8—C12—H12B109.5
C3—C4—H4119.4H12A—C12—H12B109.5
C4A—C4—H4119.4C8—C12—H12C109.5
C4—C4A—C10A119.13 (14)H12A—C12—H12C109.5
C4—C4A—C4B118.45 (14)H12B—C12—H12C109.5
C10A—C4A—C4B122.38 (14)C4B—C13—H13A109.5
C5—C4B—C4A111.34 (13)C4B—C13—H13B109.5
C5—C4B—C8A107.50 (13)H13A—C13—H13B109.5
C4A—C4B—C8A108.47 (13)C4B—C13—H13C109.5
C5—C4B—C13106.98 (14)H13A—C13—H13C109.5
C4A—C4B—C13107.10 (13)H13B—C13—H13C109.5
C8A—C4B—C13115.50 (14)C1—C14—C15111.07 (15)
C6—C5—C4B120.85 (18)C1—C14—C16114.48 (16)
C4B—C5—C6A111.8 (4)C15—C14—C16111.19 (17)
C6—C5—H5119.6C1—C14—H14106.5
C4B—C5—H5119.6C15—C14—H14106.5
O1—C7—C8118.7 (5)C16—C14—H14106.5
O1A—C7—C8123.5 (13)C14—C15—H15A109.5
C6—C7—C8118.54 (17)C14—C15—H15B109.5
C8—C7—C6A120.1 (3)H15A—C15—H15B109.5
C7—C8—C11106.34 (15)C14—C15—H15C109.5
C7—C8—C12108.06 (17)H15A—C15—H15C109.5
C11—C8—C12108.06 (18)H15B—C15—H15C109.5
C7—C8—C8A111.32 (15)C14—C16—H16A109.5
C11—C8—C8A108.33 (15)C14—C16—H16B109.5
C12—C8—C8A114.38 (14)H16A—C16—H16B109.5
C9—C8A—C4B109.20 (13)C14—C16—H16C109.5
C9—C8A—C8114.04 (14)H16A—C16—H16C109.5
C4B—C8A—C8116.83 (14)H16B—C16—H16C109.5
C9—C8A—H8A105.2O3—C17—O2123.70 (15)
C4B—C8A—H8A105.2O3—C17—C18126.10 (15)
C8—C8A—H8A105.2O2—C17—C18110.19 (14)
C10—C9—C8A109.53 (14)C17—C18—H18A109.5
C10—C9—H9A109.8C17—C18—H18B109.5
C8A—C9—H9A109.8H18A—C18—H18B109.5
C10—C9—H9B109.8C17—C18—H18C109.5
C8A—C9—H9B109.8H18A—C18—H18C109.5
H9A—C9—H9B108.2H18B—C18—H18C109.5
C10A—C10—C9114.07 (14)C5—C6—C7124.3 (2)
C10A—C10—H10A108.7C5—C6—H6117.9
C9—C10—H10A108.7C7—C6—H6117.9
C10A—C10—H10B108.7C7—C6A—C5105.2 (7)
C9—C10—H10B108.7C7—C6A—H6A127.4
H10A—C10—H10B107.6C5—C6A—H6A127.4
D—H···AD—HH···AD···AD—H···A
C4—H4···O1i0.952.503.411 (10)159
C4—H4···O1Ai0.952.553.428 (17)154
C10—H10B···O1Aii0.992.553.328 (17)136
C13—H13C···O3iii0.982.593.530 (2)161
C18—H18A···Cg1iv0.982.553.504 (2)165
  18 in total

1.  A novel antimicrobial abietane-type diterpene from Salvia albocaerulea.

Authors:  R Pereda-Miranda; L Hernández; R López
Journal:  Planta Med       Date:  1992-04       Impact factor: 3.352

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Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

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