Literature DB >> 25249914

(4bS,8aS)-1-Isopropyl-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octa-hydro-phenan-thren-2-yl benzoate.

Radouane Oubabi1, Aziz Auhmani1, My Youssef Ait Itto1, Abdelwahed Auhmani1, Jean-Claude Daran2.   

Abstract

The title compound, C27H34O2, was hemisynthesized through direct benzoyl-ation of the naturally occurring meroterpene totarol. The central fused six-membered ring has a half-chair conformation, whereas the terminal six-membered ring displays a chair conformation. The dihedral angle between the fused benzene ring and the benzoyl benzene ring is 73.05 (14)°. The S,S chirality of the mol-ecule is consistent with the synthetic pathway, and confirmed by the refinement of the Flack parameter.

Entities:  

Keywords:  crystal structure

Year:  2014        PMID: 25249914      PMCID: PMC4158506          DOI: 10.1107/S1600536814015827

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of totarol [systematic name: (4bS,8aS)-4b,8,8-trimethyl-1-propan-2-yl-5,6,7,8a,9,10-hexa­hydro­phenanthren-2-ol], see: Short & Stromberg (1937 ▶); Barrero et al. (2003 ▶); Haraguchi et al. (1996 ▶); Bernabeu et al. (2002 ▶); Marcos et al. (2003 ▶); Tacon et al. (2012 ▶). For conformational analysis and absolute configuration determination, see: Cremer & Pople (1975 ▶); Flack (1983 ▶); Flack & Bernardinelli (2000 ▶); Parsons et al. (2013 ▶); Spek (2009 ▶). For related structures, see: Zeroual et al. (2008 ▶); Oubabi et al. (2014 ▶); Pettit et al. (2004 ▶).

Experimental

Crystal data

C27H34O2 M = 390.54 Monoclinic, a = 7.7369 (3) Å b = 7.2079 (4) Å c = 20.2499 (9) Å β = 99.816 (4)° V = 1112.74 (9) Å3 Z = 2 Cu Kα radiation μ = 0.55 mm−1 T = 180 K 0.50 × 0.25 × 0.07 mm

Data collection

Agilent Xcalibur (Eos, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.689, T max = 1.0 9197 measured reflections 3116 independent reflections 2926 reflections with I > 2σ(I) R int = 0.033 θmax = 60.8°

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.095 S = 1.04 3116 reflections 267 parameters 1 restraint H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack x determined using 1138 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▶) Absolute structure parameter: −0.11 (17) Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814015827/bh2501sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015827/bh2501Isup2.hkl CCDC reference: 1012402 Additional supporting information: crystallographic information; 3D view; checkCIF report
C27H34O2F(000) = 424
Mr = 390.54Dx = 1.166 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54184 Å
a = 7.7369 (3) ÅCell parameters from 4294 reflections
b = 7.2079 (4) Åθ = 4.4–60.4°
c = 20.2499 (9) ŵ = 0.55 mm1
β = 99.816 (4)°T = 180 K
V = 1112.74 (9) Å3Flattened, colourless
Z = 20.50 × 0.25 × 0.07 mm
Agilent Xcalibur (Eos, Gemini ultra) diffractometer3116 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2926 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.033
Detector resolution: 16.1978 pixels mm-1θmax = 60.8°, θmin = 4.4°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −8→7
Tmin = 0.689, Tmax = 1.0l = −22→22
9197 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0501P)2 + 0.1662P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3116 reflectionsΔρmax = 0.13 e Å3
267 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: Flack x determined using 1138 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
0 constraintsAbsolute structure parameter: −0.11 (17)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
O11.0825 (2)0.2023 (3)0.33409 (8)0.0388 (5)
O21.2632 (2)0.2265 (4)0.25828 (10)0.0661 (7)
C10.8685 (3)0.4403 (4)0.29484 (14)0.0413 (7)
C20.9421 (3)0.2698 (4)0.28549 (13)0.0359 (6)
C30.8814 (3)0.1570 (4)0.23162 (13)0.0385 (7)
H30.93380.03950.22700.046*
C40.7432 (3)0.2179 (4)0.18449 (13)0.0374 (6)
H40.70190.14160.14680.045*
C4A0.6625 (3)0.3879 (4)0.19052 (12)0.0319 (6)
C4B0.5137 (3)0.4506 (4)0.13429 (12)0.0330 (6)
C50.4014 (3)0.2837 (4)0.10522 (14)0.0405 (7)
H5A0.47300.20220.08120.049*
H5B0.36750.21130.14260.049*
C60.2361 (4)0.3401 (5)0.05730 (15)0.0462 (8)
H6A0.26910.40280.01780.055*
H6B0.16760.22790.04150.055*
C70.1239 (3)0.4697 (4)0.09132 (14)0.0425 (7)
H7A0.08350.40240.12850.051*
H7B0.01880.50500.05870.051*
C80.2197 (3)0.6458 (4)0.11908 (13)0.0390 (7)
C8A0.3948 (3)0.5887 (4)0.16448 (12)0.0334 (6)
H8A0.35850.52090.20300.040*
C90.5059 (4)0.7494 (4)0.19617 (15)0.0431 (7)
H9A0.56730.80710.16230.052*
H9B0.42900.84450.21130.052*
C100.6400 (4)0.6854 (4)0.25540 (15)0.0470 (7)
H10A0.58170.67680.29520.056*
H10B0.73280.78100.26490.056*
C10A0.7261 (3)0.5000 (4)0.24594 (13)0.0379 (6)
C110.9377 (5)0.5598 (5)0.35593 (17)0.0653 (11)
H110.86810.67740.35050.078*
C121.1296 (6)0.6161 (8)0.36183 (19)0.0941 (16)
H12A1.20450.50790.37450.141*
H12B1.15680.71270.39610.141*
H12C1.15080.66410.31860.141*
C130.9041 (5)0.4715 (8)0.42098 (18)0.0814 (14)
H13A0.77880.44400.41740.122*
H13B0.94040.55740.45830.122*
H13C0.97160.35620.42900.122*
C140.6051 (3)0.5319 (5)0.07852 (14)0.0494 (8)
H14A0.66720.64600.09470.074*
H14B0.51700.55980.03900.074*
H14C0.68920.44140.06660.074*
C150.2425 (4)0.7775 (5)0.06206 (17)0.0540 (8)
H15A0.29170.70920.02770.081*
H15B0.32220.87830.07960.081*
H15C0.12830.82930.04230.081*
C160.1036 (4)0.7443 (6)0.16232 (18)0.0629 (10)
H16A−0.01210.76800.13550.094*
H16B0.15800.86220.17850.094*
H16C0.09070.66550.20060.094*
C171.2417 (3)0.1844 (4)0.31324 (14)0.0413 (7)
C181.3781 (3)0.1078 (4)0.36592 (13)0.0366 (6)
C191.3442 (4)0.0440 (5)0.42702 (13)0.0424 (7)
H191.22890.05260.43710.051*
C201.4771 (4)−0.0320 (5)0.47326 (15)0.0546 (8)
H201.4535−0.07620.51500.066*
C211.6455 (4)−0.0433 (5)0.45829 (16)0.0532 (8)
H211.7372−0.09580.48990.064*
C221.6800 (4)0.0207 (5)0.39825 (16)0.0513 (8)
H221.79570.01330.38860.062*
C231.5477 (3)0.0959 (5)0.35175 (14)0.0457 (7)
H231.57210.13950.31000.055*
U11U22U33U12U13U23
O10.0294 (9)0.0476 (12)0.0387 (9)0.0043 (9)0.0037 (7)0.0049 (9)
O20.0380 (11)0.110 (2)0.0515 (13)0.0043 (13)0.0107 (9)0.0304 (14)
C10.0373 (14)0.0389 (17)0.0442 (15)0.0012 (13)−0.0026 (12)−0.0076 (13)
C20.0268 (12)0.0423 (18)0.0375 (14)0.0014 (13)0.0026 (10)0.0028 (13)
C30.0338 (13)0.0370 (17)0.0453 (15)0.0043 (13)0.0085 (11)−0.0029 (13)
C40.0334 (13)0.0381 (17)0.0406 (14)0.0010 (13)0.0064 (11)−0.0082 (13)
C4A0.0281 (13)0.0335 (16)0.0342 (14)−0.0025 (11)0.0059 (10)−0.0010 (11)
C4B0.0303 (13)0.0361 (16)0.0324 (12)−0.0024 (12)0.0047 (10)0.0001 (12)
C50.0369 (14)0.0390 (17)0.0428 (15)0.0014 (13)−0.0008 (12)−0.0081 (13)
C60.0404 (16)0.0428 (19)0.0500 (17)−0.0026 (14)−0.0078 (13)−0.0094 (14)
C70.0303 (13)0.0460 (18)0.0491 (15)−0.0025 (13)0.0011 (11)−0.0001 (14)
C80.0324 (13)0.0398 (18)0.0432 (14)0.0010 (13)0.0022 (11)−0.0012 (13)
C8A0.0324 (13)0.0338 (16)0.0336 (13)0.0001 (12)0.0049 (10)−0.0004 (12)
C90.0420 (15)0.0328 (17)0.0509 (16)0.0027 (13)−0.0023 (12)−0.0047 (13)
C100.0468 (16)0.0366 (18)0.0512 (16)0.0047 (14)−0.0100 (13)−0.0096 (14)
C10A0.0345 (13)0.0347 (16)0.0429 (15)−0.0011 (12)0.0018 (11)−0.0053 (12)
C110.069 (2)0.053 (2)0.061 (2)0.0181 (18)−0.0263 (16)−0.0213 (18)
C120.122 (4)0.091 (3)0.057 (2)−0.063 (3)−0.021 (2)0.000 (2)
C130.056 (2)0.129 (4)0.060 (2)−0.009 (2)0.0117 (16)−0.046 (3)
C140.0359 (14)0.070 (2)0.0441 (15)0.0045 (16)0.0121 (12)0.0086 (16)
C150.0504 (17)0.046 (2)0.0610 (19)0.0002 (15)−0.0043 (14)0.0134 (16)
C160.0399 (16)0.076 (3)0.071 (2)0.0171 (18)0.0046 (15)−0.018 (2)
C170.0321 (13)0.0477 (19)0.0441 (16)0.0019 (13)0.0061 (11)0.0081 (14)
C180.0345 (13)0.0351 (16)0.0391 (14)−0.0002 (12)0.0033 (11)−0.0020 (12)
C190.0370 (14)0.0466 (18)0.0426 (15)0.0003 (14)0.0040 (12)−0.0001 (14)
C200.0525 (18)0.065 (2)0.0442 (15)0.0038 (17)0.0011 (14)0.0082 (16)
C210.0441 (16)0.052 (2)0.0562 (18)0.0095 (16)−0.0109 (14)−0.0003 (16)
C220.0340 (15)0.058 (2)0.0602 (19)0.0077 (15)0.0039 (13)−0.0046 (17)
C230.0344 (14)0.055 (2)0.0471 (15)0.0033 (14)0.0057 (12)0.0011 (15)
O1—C171.374 (3)C10—C10A1.520 (4)
O1—C21.422 (3)C10—H10A0.9900
O2—C171.192 (3)C10—H10B0.9900
C1—C21.381 (4)C11—C121.524 (6)
C1—C10A1.417 (4)C11—C131.524 (6)
C1—C111.528 (4)C11—H111.0000
C2—C31.377 (4)C12—H12A0.9800
C3—C41.378 (4)C12—H12B0.9800
C3—H30.9500C12—H12C0.9800
C4—C4A1.390 (4)C13—H13A0.9800
C4—H40.9500C13—H13B0.9800
C4A—C10A1.402 (4)C13—H13C0.9800
C4A—C4B1.542 (3)C14—H14A0.9800
C4B—C51.540 (4)C14—H14B0.9800
C4B—C141.547 (4)C14—H14C0.9800
C4B—C8A1.550 (4)C15—H15A0.9800
C5—C61.523 (4)C15—H15B0.9800
C5—H5A0.9900C15—H15C0.9800
C5—H5B0.9900C16—H16A0.9800
C6—C71.518 (4)C16—H16B0.9800
C6—H6A0.9900C16—H16C0.9800
C6—H6B0.9900C17—C181.474 (4)
C7—C81.528 (4)C18—C191.387 (4)
C7—H7A0.9900C18—C231.392 (4)
C7—H7B0.9900C19—C201.380 (4)
C8—C151.528 (4)C19—H190.9500
C8—C161.531 (4)C20—C211.390 (5)
C8—C8A1.557 (4)C20—H200.9500
C8A—C91.518 (4)C21—C221.369 (5)
C8A—H8A1.0000C21—H210.9500
C9—C101.518 (4)C22—C231.378 (4)
C9—H9A0.9900C22—H220.9500
C9—H9B0.9900C23—H230.9500
C17—O1—C2116.01 (19)C10A—C10—H10B108.5
C2—C1—C10A117.7 (2)H10A—C10—H10B107.5
C2—C1—C11121.2 (3)C4A—C10A—C1120.6 (3)
C10A—C1—C11121.2 (3)C4A—C10A—C10120.4 (2)
C3—C2—C1122.8 (2)C1—C10A—C10119.0 (2)
C3—C2—O1117.6 (2)C12—C11—C13110.5 (3)
C1—C2—O1119.6 (2)C12—C11—C1114.6 (3)
C2—C3—C4118.7 (3)C13—C11—C1112.1 (3)
C2—C3—H3120.7C12—C11—H11106.3
C4—C3—H3120.7C13—C11—H11106.3
C3—C4—C4A121.8 (2)C1—C11—H11106.3
C3—C4—H4119.1C11—C12—H12A109.5
C4A—C4—H4119.1C11—C12—H12B109.5
C4—C4A—C10A118.5 (2)H12A—C12—H12B109.5
C4—C4A—C4B118.9 (2)C11—C12—H12C109.5
C10A—C4A—C4B122.6 (2)H12A—C12—H12C109.5
C5—C4B—C4A110.8 (2)H12B—C12—H12C109.5
C5—C4B—C14108.4 (2)C11—C13—H13A109.5
C4A—C4B—C14105.85 (19)C11—C13—H13B109.5
C5—C4B—C8A108.6 (2)H13A—C13—H13B109.5
C4A—C4B—C8A108.4 (2)C11—C13—H13C109.5
C14—C4B—C8A114.9 (2)H13A—C13—H13C109.5
C6—C5—C4B113.1 (2)H13B—C13—H13C109.5
C6—C5—H5A109.0C4B—C14—H14A109.5
C4B—C5—H5A109.0C4B—C14—H14B109.5
C6—C5—H5B109.0H14A—C14—H14B109.5
C4B—C5—H5B109.0C4B—C14—H14C109.5
H5A—C5—H5B107.8H14A—C14—H14C109.5
C7—C6—C5111.0 (2)H14B—C14—H14C109.5
C7—C6—H6A109.4C8—C15—H15A109.5
C5—C6—H6A109.4C8—C15—H15B109.5
C7—C6—H6B109.4H15A—C15—H15B109.5
C5—C6—H6B109.4C8—C15—H15C109.5
H6A—C6—H6B108.0H15A—C15—H15C109.5
C6—C7—C8113.5 (2)H15B—C15—H15C109.5
C6—C7—H7A108.9C8—C16—H16A109.5
C8—C7—H7A108.9C8—C16—H16B109.5
C6—C7—H7B108.9H16A—C16—H16B109.5
C8—C7—H7B108.9C8—C16—H16C109.5
H7A—C7—H7B107.7H16A—C16—H16C109.5
C15—C8—C7110.4 (2)H16B—C16—H16C109.5
C15—C8—C16107.4 (3)O2—C17—O1122.5 (2)
C7—C8—C16107.5 (2)O2—C17—C18125.0 (2)
C15—C8—C8A114.1 (2)O1—C17—C18112.4 (2)
C7—C8—C8A108.4 (2)C19—C18—C23119.5 (3)
C16—C8—C8A108.7 (2)C19—C18—C17123.3 (2)
C9—C8A—C4B109.0 (2)C23—C18—C17117.2 (2)
C9—C8A—C8114.9 (2)C20—C19—C18120.3 (3)
C4B—C8A—C8116.9 (2)C20—C19—H19119.9
C9—C8A—H8A104.9C18—C19—H19119.9
C4B—C8A—H8A104.9C19—C20—C21119.5 (3)
C8—C8A—H8A104.9C19—C20—H20120.2
C10—C9—C8A111.3 (3)C21—C20—H20120.2
C10—C9—H9A109.4C22—C21—C20120.4 (3)
C8A—C9—H9A109.4C22—C21—H21119.8
C10—C9—H9B109.4C20—C21—H21119.8
C8A—C9—H9B109.4C21—C22—C23120.3 (3)
H9A—C9—H9B108.0C21—C22—H22119.8
C9—C10—C10A115.0 (2)C23—C22—H22119.8
C9—C10—H10A108.5C22—C23—C18120.0 (3)
C10A—C10—H10A108.5C22—C23—H23120.0
C9—C10—H10B108.5C18—C23—H23120.0
  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Mode of antibacterial action of totarol, a diterpene from Podocarpus nagi.

Authors:  H Haraguchi; S Oike; H Muroi; I Kubo
Journal:  Planta Med       Date:  1996-04       Impact factor: 3.352

3.  Synthesis, biological evaluation and mechanistic studies of totarol amino alcohol derivatives as potential antimalarial agents.

Authors:  Claire Tacon; Eric M Guantai; Peter J Smith; Kelly Chibale
Journal:  Bioorg Med Chem       Date:  2011-12-03       Impact factor: 3.641

4.  Antineoplastic agents. 529. Isolation and structure of nootkastatins 1 and 2 from the Alaskan yellow cedar Chamaecyparis nootkatensis.

Authors:  George R Pettit; Rui Tan; Julian S Northen; Delbert L Herald; Jean-Charles Chapuis; Robin K Pettit
Journal:  J Nat Prod       Date:  2004-09       Impact factor: 4.050

5.  Diterpenoids from Tetraclinis articulata that inhibit various human leukocyte functions.

Authors:  Alejandro F Barrero; José F Quílez del Moral; Rut Lucas; Miguel Payá; Mohamed Akssira; Said Akaad; Fouad Mellouki
Journal:  J Nat Prod       Date:  2003-06       Impact factor: 4.050

6.  A MAS-NMR study of the location of (+)-totarol, a diterpenoid bioactive molecule, in phospholipid model membranes.

Authors:  Angela Bernabeu; S Shapiro; José Villalaín
Journal:  Chem Phys Lipids       Date:  2002-10       Impact factor: 3.329

7.  (4aS,10aS)-7-Hydr-oxy-8-isopropyl-1,1,4a-trimethyl-1,2,3,4,4a,9,10,10a-octa-hydro-phenanthrene: a new diterpenoid compound.

Authors:  Abdellah Zeroual; Noureddine Mazoir; Jean-Claude Daran; Mohamed Akssira; Ahmed Benharref
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20

8.  (4bS,8aS)-1-Isopropyl-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octa-hydro-phenan-thren-2-yl acetate.

Authors:  Radouane Oubabi; Aziz Auhmani; My Youssef Ait Itto; Abdelwahed Auhmani; Jean-Claude Daran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-19

9.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total
  1 in total

1.  Crystal structure of (4bS,8aR)-1-isopropyl-4b,8,8-trimethyl-7-oxo-4b,7,8,8a,9,10-hexa-hydro-phenanthren-2-yl acetate.

Authors:  Yassine Laamari; Moulay Youssef Ait Itto; Abdelkhalek Riahi; Sylviane Chevreux; Aziz Auhmani; El Mostafa Ketatni
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-04-27
  1 in total

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