| Literature DB >> 29843532 |
Xi Liu1, Lei Chen1, Tao Zhang1.
Abstract
Golgi membrane protein 1 (GOLM1) is a transmembrane glycoprotein of the Golgi cisternae, which is implicated in carcinogenesis of multiple types of cancer. In this study, using data from the Gene Expression Omnibus and The Cancer Genome Atlas, we compared the expression of GOLM1 in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) and studied its prognostic value in terms of overall survival (OS) and recurrence-free survival (RFS) in these 2 subtypes of non-small cell lung cancer (NSCLC). Results showed that GOLM1 was significantly upregulated in both LUAD and LUSC tissues compared to the normal controls. However, GOLM1 expression was higher in LUAD tissues than in LUSC tissues. More importantly, using over 10 years' survival data from 502 patients with LUAD and 494 patients with LUSC, we found that high GOLM1 expression was associated with unfavorable OS and RFS in patients with LUAD, but not in patients with LUSC. The following univariate and multivariate analyses confirmed that increased GOLM1 expression was an independent prognostic indicator of poor OS (hazard ratio [HR]: 1.30, 95% confidence interval [CI]: 1.11-1.54, P = .002) and RFS (HR: 1.37, 95% CI: 1.14-1.64, P = .001) in patients with LUAD. Of 511 cases with LUAD, 248 (48.5%) had heterozygous loss (-1), while 28 (5.5%) of 511 cases with LUAD had low-level copy gain (+1). In addition, we also found that the methylation status of 1 CpG site (chr9: 88,694,942-88,694,944) showed a weak negative correlation with GOLM1 expression (Pearson r = -0.25). Based on these findings, we infer that GOLM1 might serve as a valuable prognostic biomarker in LUAD, but not in LUSC. In addition, DNA copy number alterations and methylation might be 2 important mechanisms of dysregulated GOLM1 in LUAD.Entities:
Keywords: GOLM1; copy number; lung adenocarcinoma; methylation; prognosis
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Year: 2018 PMID: 29843532 PMCID: PMC6028180 DOI: 10.1177/1073274818778001
Source DB: PubMed Journal: Cancer Control ISSN: 1073-2748 Impact factor: 3.302
Figure 1.Golgi membrane protein 1 (GOLM1) was significantly upregulated in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) compared to normal lung tissues. A-D, Heatmap (A and C) and plot chart (B and D) of GOLM1 expression in LUAD (A and B) and LUSC (C and D) tissues compared to their respective normal controls. E, The GOLM1 detection call in 40 cases with LUAD and 18 cases with LUSC. Comparison was performed using data from GSE10245,[15] with GEO2R. F and G, Heatmap (F) and plot chart (G) comparing GOLM1 expression between LUAD (N = 514) and LUSC (N = 502) cases in The Cancer Genome Atlas (TCGA). H and I, Immunohistochemistry (IHC) staining of GOLM1 expression in normal respiratory epithelial tissue (H) and in 5 cases of normal LUAD tissues. Images were obtained from http://www.proteinatlas.org/ENSG00000135052-GOLM1/pathology/tissue/lung+cancer#ihc.
Figure 2.Comparison of Golgi membrane protein 1 (GOLM1) expression between the groups with different survival outcomes. A-D, Comparison of GOLM1 expression between the deceased and the living groups (A and C) and between the groups with or without recurrence (B and D) in patients with lung adenocarcinoma (LUAD; A-B) and in patients with lung squamous cell carcinoma (LUSC; C-D). Survival data were obtained from The Cancer Genome Atlas (TCGA).
Figure 3.High Golgi membrane protein 1 (GOLM1) expression was associated with poor overall survival (OS) and recurrence-free survival (RFS) in patients with lung adenocarcinoma (LUAD), but not in patients with lung squamous cell carcinoma (LUSC). A-D, Kaplan-Meier curves of OS (A and C) and RFS (B and D) in patients with LUAD (A-B) and LUSC (C-D), respectively. Both patients with LUAD and LUSC were divided into high/low GOLM1 expression group using the best cutoff model. Survival data were obtained from The Cancer Genome Atlas (TCGA).
Comparison of the Clinicopathological Parameters Between High and Low GOLM1 Expression Groups in Patients With LUAD.a
| Parameters |
| χ2 |
| ||
|---|---|---|---|---|---|
| High, N = 333 | Low, N = 169 | ||||
| Age, mean ± SD | 64.77 ± 9.82 | 66.42 ± 10.15 | .082 | ||
| Gender | Female | 178 | 93 | 0.11 | .74 |
| Male | 155 | 76 | |||
| Smoking history | 2/3/4/5 | 282 | 134 | 1.80 | .18 |
| 1 | 43 | 29 | |||
| No data | 8 | 6 | |||
| Pathologic stage | III/IV | 76 | 30 | 1.58 | 1.26 |
| I/II | 253 | 135 | |||
| Discrepancy/no data | 4 | 4 | |||
| Nodal invasion | N0 | 208 | 116 | 3.40 | .07 |
| N1/2/3 | 121 | 46 | |||
| NX/no data | 4 | 7 | |||
| Residual tumors | R0 | 228 | 108 | 0.20 | .65 |
| R1/R2 | 10 | 6 | |||
| RX/no data | 95 | 55 | |||
| Radiation therapy | No | 255 | 133 | 0.021 | .89 |
| Yes | 40 | 20 | |||
| No data | 38 | 16 | |||
| Targeted molecular therapy | No | 193 | 103 | 0.35 | .56 |
| Yes | 102 | 48 | |||
| No data | 38 | 18 | |||
| Recurrence status | No | 163 | 112 | 9.46 | .0021 |
| Yes | 112 | 39 | |||
| No data | 58 | 18 | |||
| Living status | Living | 193 | 126 | 13.33 | <.001 |
| Dead | 140 | 43 | |||
Abbreviations: GOLM1, Golgi membrane protein; LUAD, lung adenocarcinoma; R0, No residual tumor; R1, Microscopic residual tumor; R2, Macroscopic residual tumor; RX, The presence of residual tumor cannot be assessed; SD, standard deviation.
a Smoking history: 1, lifelong nonsmoker; 2, current smoker; 3, current reformed smoker (for >15 years); 4, current reformed smoker (for ≤15 years); 5, current reformed smoker (duration not specified).
Univariate and Multivariate Analysis of Overall Survival in Patients With LUAD.a
| Parameters | Univariate Analysis | Multivariate Analysis | ||||||
|---|---|---|---|---|---|---|---|---|
| HR | 95% CI |
| HR | 95% CI |
| |||
| Lower | Upper | Lower | Upper | |||||
| GOLM1 (continuous variable) | ||||||||
| Age (continuous) | 1.01 | 0.99 | 1.02 | .33 | ||||
| Gender, female vs male | 0.94 | 0.70 | 1.26 | .67 | ||||
| Smoking history, 2/3/4/5 vs 1 | 0.91 | 0.60 | 1.38 | .66 | ||||
| Pathologic stage III/IV vs I/II | 2.65 | 1.94 | 3.61 | <.001 | 1.74 | 1.20 | 2.52 | .003 |
| Nodal status, positive vs negative | 2.57 | 1.91 | 3.45 | <.001 | 1.87 | 1.32 | 2.65 | <.001 |
| Residual tumors, yes vs no | 3.94 | 2.20 | 7.03 | <.001 | 3.28 | 1.80 | 5.97 | <.001 |
| GOLM1 | 1.30 | 1.11 | 1.53 | .001 | 1.30 | 1.11 | 1.54 | .002 |
|
| ||||||||
| Age (continuous) | 1.01 | 0.99 | 1.02 | .33 | ||||
| Gender, female vs male | 0.94 | 0.70 | 1.26 | .67 | ||||
| Smoking history, 2/3/4/5 vs 1 | 0.91 | 0.60 | 1.38 | .66 | ||||
| Pathologic stage III/IV vs I/II | 2.65 | 1.94 | 3.61 | <.001 | 1.75 | 1.21 | 2.53 | .003 |
| Nodal status, positive vs negative | 2.57 | 1.91 | 3.45 | <.001 | 1.85 | 1.30 | 2.61 | .001 |
| Residual tumors, yes vs no | 3.94 | 2.20 | 7.03 | <.001 | 3.28 | 1.81 | 5.94 | <.001 |
|
| 1.90 | 1.35 | 2.67 | <.001 | 1.87 | 1.32 | 2.66 | <.001 |
Abbreviations: CI, confidence interval; HR, hazard ratio; GOLM1, Golgi membrane protein 1; LUAD, lung adenocarcinoma.
a Pathologic stage, nodal status, residual tumors, and GOLM1 expression were included in multivariable analysis.
Univariate and Multivariate Analysis of Recurrence-Free Survival in Patients With LUAD.a
| Parameters | Univariate Analysis | Multivariate Analysis | ||||||
|---|---|---|---|---|---|---|---|---|
| HR | 95% CI |
| HR | 95% CI |
| |||
| Lower | Upper | Lower | Upper | |||||
|
| ||||||||
| Age (continuous) | 1.01 | 0.99 | 1.03 | .32 | ||||
| Gender, female vs male | 1.10 | 0.79 | 1.52 | .57 | ||||
| Smoking history, 2/3/4/5 vs. 1 | 1.21 | 0.75 | 1.94 | .44 | ||||
| Pathologic stage III/IV vs I/II | 1.71 | 1.17 | 2.51 | .006 | 1.34 | 0.84 | 2.15 | .22 |
| Nodal status, positive vs negative | 1.63 | 1.18 | 2.26 | .003 | 1.26 | 0.84 | 1.88 | .26 |
| Residual tumors, yes vs no | 3.81 | 1.84 | 7.89 | <.001 | 3.87 | 1.81 | 8.27 | <.001 |
|
| 1.37 | 1.15 | 1.63 | .001 | 1.37 | 1.14 | 1.64 | .001 |
|
| ||||||||
| Age (continuous) | 1.01 | 0.99 | 1.03 | .32 | ||||
| Gender, female vs male | 1.10 | 0.79 | 1.52 | .57 | ||||
| Smoking history, 2/3/4/5 vs 1 | 1.21 | 0.75 | 1.94 | .44 | ||||
| Pathologic stage III/IV vs I/II | 1.71 | 1.17 | 2.51 | .006 | 1.32 | 0.83 | 2.10 | .25 |
| Nodal status, positive vs negative | 1.63 | 1.18 | 2.26 | .003 | 1.26 | 0.84 | 1.89 | .26 |
| Residual tumors, yes vs no | 3.81 | 1.84 | 7.89 | <.001 | 3.99 | 1.87 | 8.48 | <.001 |
|
| 2.08 | 1.46 | 2.97 | <.001 | 2.09 | 1.45 | 3.01 | <.001 |
Abbreviations: CI, confidence interval; HR, hazard ratio; GOLM1, Golgi membrane protein 1; LUAD, lung adenocarcinoma.
a Clinical stage, nodal status, residual tumors, and GOLM1 expression were included in multivariable analysis.
Figure 4.The correlation between Golgi membrane protein 1 (GOLM1) expression and its DNA copy number alterations (CNAs) or methylation in patients with lung adenocarcinoma (LUAD). A and B, Heatmap (A) and plot chart (B) of GOLM1 expression in groups with different CNAs in patients with LUAD. Homozygous deletion (−2); heterozygous loss (−1), copy neutral (0), and low-level copy gain (+1) groups. C and D, Heatmap (C) and regression analysis (D) of the correlation between GOLM1 expression and its DNA methylation in patients with LUAD.
Figure 5.The correlation between Golgi membrane protein 1 (GOLM1) expression and its DNA CNAs or methylation in patients with lung squamous cell carcinoma (LUSC). A and B, Heatmap (A) and plot chart (B) of GOLM1 expression in groups with different CNAs in patients with LUSC. Homozygous deletion (−2); heterozygous loss (−1), copy neutral (0), low-level copy gain (+1), and high-level amplification (+2) groups. C and D, Heatmap (C) and regression analysis (D) of the correlation between GOLM1 expression and its DNA methylation in patients with LUSC.