Literature DB >> 21139605

Towards a knowledge-based Human Protein Atlas.

Mathias Uhlen, Per Oksvold, Linn Fagerberg, Emma Lundberg, Kalle Jonasson, Mattias Forsberg, Martin Zwahlen, Caroline Kampf, Kenneth Wester, Sophia Hober, Henrik Wernerus, Lisa Björling, Fredrik Ponten.   

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Year:  2010        PMID： 21139605     DOI： 10.1038/nbt1210-1248

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  15 in total

1.  Antibodypedia, a portal for sharing antibody and antigen validation data.

Authors:  Erik Björling; Mathias Uhlén
Journal:  Mol Cell Proteomics       Date:  2008-07-29       Impact factor: 5.911

2.  A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Authors:  Marc Sultan; Marcel H Schulz; Hugues Richard; Alon Magen; Andreas Klingenhoff; Matthias Scherf; Martin Seifert; Tatjana Borodina; Aleksey Soldatov; Dmitri Parkhomchuk; Dominic Schmidt; Sean O'Keeffe; Stefan Haas; Martin Vingron; Hans Lehrach; Marie-Laure Yaspo
Journal:  Science       Date:  2008-07-03       Impact factor: 47.728

3.  A global map of human gene expression.

Authors:  Margus Lukk; Misha Kapushesky; Janne Nikkilä; Helen Parkinson; Angela Goncalves; Wolfgang Huber; Esko Ukkonen; Alvis Brazma
Journal:  Nat Biotechnol       Date:  2010-04       Impact factor: 54.908

4.  A human protein atlas for normal and cancer tissues based on antibody proteomics.

Authors:  Mathias Uhlén; Erik Björling; Charlotta Agaton; Cristina Al-Khalili Szigyarto; Bahram Amini; Elisabet Andersen; Ann-Catrin Andersson; Pia Angelidou; Anna Asplund; Caroline Asplund; Lisa Berglund; Kristina Bergström; Harry Brumer; Dijana Cerjan; Marica Ekström; Adila Elobeid; Cecilia Eriksson; Linn Fagerberg; Ronny Falk; Jenny Fall; Mattias Forsberg; Marcus Gry Björklund; Kristoffer Gumbel; Asif Halimi; Inga Hallin; Carl Hamsten; Marianne Hansson; My Hedhammar; Görel Hercules; Caroline Kampf; Karin Larsson; Mats Lindskog; Wald Lodewyckx; Jan Lund; Joakim Lundeberg; Kristina Magnusson; Erik Malm; Peter Nilsson; Jenny Odling; Per Oksvold; Ingmarie Olsson; Emma Oster; Jenny Ottosson; Linda Paavilainen; Anja Persson; Rebecca Rimini; Johan Rockberg; Marcus Runeson; Asa Sivertsson; Anna Sköllermo; Johanna Steen; Maria Stenvall; Fredrik Sterky; Sara Strömberg; Mårten Sundberg; Hanna Tegel; Samuel Tourle; Eva Wahlund; Annelie Waldén; Jinghong Wan; Henrik Wernérus; Joakim Westberg; Kenneth Wester; Ulla Wrethagen; Lan Lan Xu; Sophia Hober; Fredrik Pontén
Journal:  Mol Cell Proteomics       Date:  2005-08-27       Impact factor: 5.911

5.  The call of the human proteome.

Authors: 
Journal:  Nat Methods       Date:  2010-09       Impact factor: 28.547

6.  A gene-centric human proteome project: HUPO--the Human Proteome organization.

Authors: 
Journal:  Mol Cell Proteomics       Date:  2010-02       Impact factor: 5.911

Review 7.  A genecentric Human Protein Atlas for expression profiles based on antibodies.

Authors:  Lisa Berglund; Erik Björling; Per Oksvold; Linn Fagerberg; Anna Asplund; Cristina Al-Khalili Szigyarto; Anja Persson; Jenny Ottosson; Henrik Wernérus; Peter Nilsson; Emma Lundberg; Asa Sivertsson; Sanjay Navani; Kenneth Wester; Caroline Kampf; Sophia Hober; Fredrik Pontén; Mathias Uhlén
Journal:  Mol Cell Proteomics       Date:  2008-10       Impact factor: 5.911

8.  Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.

Authors:  Shao-En Ong; Blagoy Blagoev; Irina Kratchmarova; Dan Bach Kristensen; Hanno Steen; Akhilesh Pandey; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2002-05       Impact factor: 5.911

9.  HMDB: the Human Metabolome Database.

Authors:  David S Wishart; Dan Tzur; Craig Knox; Roman Eisner; An Chi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; Mike Lewis; Marie-Aude Coutouly; Ian Forsythe; Peter Tang; Savita Shrivastava; Kevin Jeroncic; Paul Stothard; Godwin Amegbey; David Block; David D Hau; James Wagner; Jessica Miniaci; Melisa Clements; Mulu Gebremedhin; Natalie Guo; Ying Zhang; Gavin E Duggan; Glen D Macinnis; Alim M Weljie; Reza Dowlatabadi; Fiona Bamforth; Derrick Clive; Russ Greiner; Liang Li; Tom Marrie; Brian D Sykes; Hans J Vogel; Lori Querengesser
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

10.  Ensembl's 10th year.

Authors:  Paul Flicek; Bronwen L Aken; Benoit Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Julio Fernandez-Banet; Leo Gordon; Stefan Gräf; Syed Haider; Martin Hammond; Kerstin Howe; Andrew Jenkinson; Nathan Johnson; Andreas Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Felix Kokocinski; Gautier Koscielny; Eugene Kulesha; Daniel Lawson; Ian Longden; Tim Massingham; William McLaren; Karine Megy; Bert Overduin; Bethan Pritchard; Daniel Rios; Magali Ruffier; Michael Schuster; Guy Slater; Damian Smedley; Giulietta Spudich; Y Amy Tang; Stephen Trevanion; Albert Vilella; Jan Vogel; Simon White; Steven P Wilder; Amonida Zadissa; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; James Smith; Stephen M J Searle
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971
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  1036 in total

1.  Stable-protein Pair Analysis as A Novel Strategy to Identify Proteomic Signatures: Application To Seminal Plasma From Infertile Patients.

Authors:  Ferran Barrachina; Meritxell Jodar; David Delgado-Dueñas; Ada Soler-Ventura; Josep Maria Estanyol; Carme Mallofré; Josep Lluís Ballescà; Rafael Oliva
Journal:  Mol Cell Proteomics       Date:  2018-12-05       Impact factor: 5.911

Review 2.  A vision for a biomedical cloud.

Authors:  R L Grossman; K P White
Journal:  J Intern Med       Date:  2012-02       Impact factor: 8.989

3.  Verification of male infertility biomarkers in seminal plasma by multiplex selected reaction monitoring assay.

Authors:  Andrei P Drabovich; Keith Jarvi; Eleftherios P Diamandis
Journal:  Mol Cell Proteomics       Date:  2011-09-20       Impact factor: 5.911

Review 4.  Overview of the matrisome--an inventory of extracellular matrix constituents and functions.

Authors:  Richard O Hynes; Alexandra Naba
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

5.  Global Interactomics Uncovers Extensive Organellar Targeting by Zika Virus.

Authors:  Etienne Coyaud; Charlene Ranadheera; Derrick Cheng; João Gonçalves; Boris J A Dyakov; Estelle M N Laurent; Jonathan St-Germain; Laurence Pelletier; Anne-Claude Gingras; John H Brumell; Peter K Kim; David Safronetz; Brian Raught
Journal:  Mol Cell Proteomics       Date:  2018-07-23       Impact factor: 5.911

6.  The expression and post-transcriptional regulation of FSTL1 transcripts in placental trophoblasts.

Authors:  Jean-Francois Mouillet; Takuya Mishima; Andrea Mollica do Amarante Paffaro; Tony W Parks; Judy A Ziegler; Tianjiao Chu; Yoel Sadovsky
Journal:  Placenta       Date:  2015-09-10       Impact factor: 3.481

Review 7.  Using reverse-phase protein arrays as pharmacodynamic assays for functional proteomics, biomarker discovery, and drug development in cancer.

Authors:  Yiling Lu; Shiyun Ling; Apurva M Hegde; Lauren A Byers; Kevin Coombes; Gordon B Mills; Rehan Akbani
Journal:  Semin Oncol       Date:  2016-06-15       Impact factor: 4.929

8.  Cyclic dinucleotides bind the C-linker of HCN4 to control channel cAMP responsiveness.

Authors:  Marco Lolicato; Annalisa Bucchi; Cristina Arrigoni; Stefano Zucca; Marco Nardini; Indra Schroeder; Katie Simmons; Marco Aquila; Dario DiFrancesco; Martino Bolognesi; Frank Schwede; Dmitry Kashin; Colin W G Fishwick; A Peter Johnson; Gerhard Thiel; Anna Moroni
Journal:  Nat Chem Biol       Date:  2014-04-28       Impact factor: 15.040

9.  The SUMO-Specific Protease Senp2 Regulates SUMOylation, Expression and Function of Human Organic Anion Transporter 3.

Authors:  Haoxun Wang; Guofeng You
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-05-01       Impact factor: 3.747

10.  Global analysis reveals the complexity of the human glomerular extracellular matrix.

Authors:  Rachel Lennon; Adam Byron; Jonathan D Humphries; Michael J Randles; Alex Carisey; Stephanie Murphy; David Knight; Paul E Brenchley; Roy Zent; Martin J Humphries
Journal:  J Am Soc Nephrol       Date:  2014-01-16       Impact factor: 10.121
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