Literature DB >> 29812901

NCI Program for Natural Product Discovery: A Publicly-Accessible Library of Natural Product Fractions for High-Throughput Screening.

Christopher C Thornburg1, John R Britt1, Jason R Evans2,3, Rhone K Akee1, James A Whitt1, Spencer K Trinh1, Matthew J Harris1, Jerell R Thompson1, Teresa L Ewing1, Suzanne M Shipley1, Paul G Grothaus3, David J Newman3, Joel P Schneider4, Tanja Grkovic1, Barry R O'Keefe3,5.   

Abstract

The US National Cancer Institute's (NCI) Natural Product Repository is one of the world's largest, most diverse collections of natural products containing over 230,000 unique extracts derived from plant, marine, and microbial organisms that have been collected from biodiverse regions throughout the world. Importantly, this national resource is available to the research community for the screening of extracts and the isolation of bioactive natural products. However, despite the success of natural products in drug discovery, compatibility issues that make extracts challenging for liquid handling systems, extended timelines that complicate natural product-based drug discovery efforts and the presence of pan-assay interfering compounds have reduced enthusiasm for the high-throughput screening (HTS) of crude natural product extract libraries in targeted assay systems. To address these limitations, the NCI Program for Natural Product Discovery (NPNPD), a newly launched, national program to advance natural product discovery technologies and facilitate the discovery of structurally defined, validated lead molecules ready for translation will create a prefractionated library from over 125,000 natural product extracts with the aim of producing a publicly-accessible, HTS-amenable library of >1,000,000 fractions. This library, representing perhaps the largest accumulation of natural-product based fractions in the world, will be made available free of charge in 384-well plates for screening against all disease states in an effort to reinvigorate natural product-based drug discovery.

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Year:  2018        PMID: 29812901      PMCID: PMC8130845          DOI: 10.1021/acschembio.8b00389

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  52 in total

1.  New trichothecenes isolated from Holarrhena floribunda.

Authors:  A Loukaci; O Kayser; K Bindseil; K Siems; J Frevert; P M Abreu
Journal:  J Nat Prod       Date:  2000-01       Impact factor: 4.050

Review 2.  Natural products--a simple model to explain chemical diversity.

Authors:  Richard D Firn; Clive G Jones
Journal:  Nat Prod Rep       Date:  2003-08       Impact factor: 13.423

3.  Discovery and Characterization of a Biologically Active Non-ATP-Competitive p38 MAP Kinase Inhibitor.

Authors:  Brice A P Wilson; Muhammad S Alam; Tad Guszczynski; Michal Jakob; Shilpa R Shenoy; Carter A Mitchell; Ekaterina I Goncharova; Jason R Evans; Peter Wipf; Gang Liu; Jonathan D Ashwell; Barry R O'Keefe
Journal:  J Biomol Screen       Date:  2015-11-04

Review 4.  Natural product libraries: assembly, maintenance, and screening.

Authors:  Mark S Butler; Frank Fontaine; Matthew A Cooper
Journal:  Planta Med       Date:  2013-12-05       Impact factor: 3.352

5.  Removal of polyphenolic compounds from aqueous plant extracts using polyamide minicolumns.

Authors:  R A Collins; T B Ng; W P Fong; C C Wan; H W Yeung
Journal:  Biochem Mol Biol Int       Date:  1998-07

Review 6.  The impact of the United Nations Convention on Biological Diversity on natural products research.

Authors:  Gordon M Cragg; Flora Katz; David J Newman; Joshua Rosenthal
Journal:  Nat Prod Rep       Date:  2012-10-05       Impact factor: 13.423

7.  Isolation and cytotoxic evaluation of marine sponge-derived norterpene peroxides.

Authors:  S Sperry; F A Valeriote; T H Corbett; P Crews
Journal:  J Nat Prod       Date:  1998-02       Impact factor: 4.050

Review 8.  Apparent activity in high-throughput screening: origins of compound-dependent assay interference.

Authors:  Natasha Thorne; Douglas S Auld; James Inglese
Journal:  Curr Opin Chem Biol       Date:  2010-04-22       Impact factor: 8.822

9.  NMR strategy for unraveling structures of bioactive sponge-derived oxy-polyhalogenated diphenyl ethers.

Authors:  Laurent Calcul; Raymond Chow; Allen G Oliver; Karen Tenney; Kimberly N White; Alexander W Wood; Catherine Fiorilla; Phillip Crews
Journal:  J Nat Prod       Date:  2009-03-27       Impact factor: 4.050

10.  High throughput extraction of plant, marine and fungal specimens for preservation of biologically active molecules.

Authors:  Thomas G McCloud
Journal:  Molecules       Date:  2010-06-24       Impact factor: 4.411

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  25 in total

1.  Harnessing Natural Product Diversity for Fluorophore Discovery: Naturally Occurring Fluorescent Hydroxyanthraquinones from the Marine Crinoid Pterometra venusta.

Authors:  A Jonathan Singh; Alexander P Gorka; Heidi R Bokesch; Antony Wamiru; Barry R O'Keefe; Martin J Schnermann; Kirk R Gustafson
Journal:  J Nat Prod       Date:  2018-11-29       Impact factor: 4.050

2.  Swinhopeptolides A and B: Cyclic Depsipeptides from the Sponge Theonella swinhoei That Inhibit Ras/Raf Interaction.

Authors:  Chang-Kwon Kim; Dongdong Wang; Heidi R Bokesch; Richard W Fuller; Emily Smith; Curtis J Henrich; David E Durrant; Deborah K Morrison; Carole A Bewley; Kirk R Gustafson
Journal:  J Nat Prod       Date:  2020-03-19       Impact factor: 4.050

Review 3.  Nuisance compounds in cellular assays.

Authors:  Jayme L Dahlin; Douglas S Auld; Ina Rothenaigner; Steve Haney; Jonathan Z Sexton; J Willem M Nissink; Jarrod Walsh; Jonathan A Lee; John M Strelow; Francis S Willard; Lori Ferrins; Jonathan B Baell; Michael A Walters; Bruce K Hua; Kamyar Hadian; Bridget K Wagner
Journal:  Cell Chem Biol       Date:  2021-02-15       Impact factor: 8.116

Review 4.  Natural Products as a Foundation for Drug Discovery.

Authors:  John A Beutler
Journal:  Curr Protoc Pharmacol       Date:  2019-09

5.  A robust and miniaturized screening platform to study natural products affecting metabolism and survival in Caenorhabditis elegans.

Authors:  Julia Zwirchmayr; Benjamin Kirchweger; Theresa Lehner; Ammar Tahir; Dagmar Pretsch; Judith M Rollinger
Journal:  Sci Rep       Date:  2020-07-23       Impact factor: 4.379

6.  Opportunities in Novel Psychotropic Drug Design from Natural Compounds.

Authors:  Siu Wa Tang; Wayne H Tang
Journal:  Int J Neuropsychopharmacol       Date:  2019-09-01       Impact factor: 5.176

Review 7.  Anti-leishmanial and Anti-inflammatory Agents from Endophytes: A Review.

Authors:  Rufin Marie Kouipou Toghueo
Journal:  Nat Prod Bioprospect       Date:  2019-09-28

8.  Screening an Established Natural Product Library Identifies Secondary Metabolites That Potentiate Conventional Antibiotics.

Authors:  Anne E Mattingly; Karlie E Cox; Richard Smith; Roberta J Melander; Robert K Ernst; Christian Melander
Journal:  ACS Infect Dis       Date:  2020-09-11       Impact factor: 5.084

9.  Prevalence and Therapeutic Challenges of Fungal Drug Resistance: Role for Plants in Drug Discovery.

Authors:  Lewis Marquez; Cassandra L Quave
Journal:  Antibiotics (Basel)       Date:  2020-03-31

10.  National Cancer Institute (NCI) Program for Natural Products Discovery: Rapid Isolation and Identification of Biologically Active Natural Products from the NCI Prefractionated Library.

Authors:  Tanja Grkovic; Rhone K Akee; Christopher C Thornburg; Spencer K Trinh; John R Britt; Matthew J Harris; Jason R Evans; Unwoo Kang; Susan Ensel; Curtis J Henrich; Kirk R Gustafson; Joel P Schneider; Barry R O'Keefe
Journal:  ACS Chem Biol       Date:  2020-04-07       Impact factor: 5.100

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