Literature DB >> 26895095

Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation.

Yi Cui1, Xiaolei Wang1, Wen Ren1, Jing Liu1, Joseph Irudayaraj1.   

Abstract

A single-cell optical clearing methodology is developed and demonstrated in hyperspectral dark-field microscopy (HSDFM) and imaging of plasmonic nanoprobes. Our strategy relies on a combination of delipidation and refractive index (RI) matching with highly biocompatible and affordable agents. Before applying the RI-matching solution, the delipidation step by using a mild solvent effectively eliminates those high-density, lipid-enriched granular structures which emit strong scattering. Upon treatment, the background scattering from cellular organelles could be repressed to a negligible level while the scattering signals from plasmonic nanomaterials increase, leading to a significant improvement of the signal-to-noise ratio (SNR). With this method established, the versatility and applicability of HSDFM are greatly enhanced. In our demonstration, quantitative mapping of the dimerization-activated receptor kinase HER2 is achieved in a single cancer cell by a nonfluorescent approach. High-resolution imaging for oncogenic mRNAs, namely ER, PR, and HER2, is performed with single labeling. More importantly, in situ multiplex detection of mRNA and protein is made possible by HSDFM since it overcomes the difficulties of complex staining and signal imbalance suffered by the conventional optical imaging. Last, we show that with optical clearing, characterization of intracellularly grown gold particulates is accomplished at an unprecedented spatiotemporal resolution. Taken together, the uniqueness of optical clearing and HSDFM is expected to open ample avenues for single-cell studies and biomedical engineering.

Entities:  

Keywords:  hyperspectral dark-field microscopy; optical clearing; plasmonic nanomaterials; single-cell analysis; single-molecule detection

Mesh:

Substances:

Year:  2016        PMID: 26895095      PMCID: PMC5338466          DOI: 10.1021/acsnano.6b00142

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  37 in total

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Authors:  Sergiy Patskovsky; Eric Bergeron; Michel Meunier
Journal:  J Biophotonics       Date:  2013-12-17       Impact factor: 3.207

2.  DNA-gold nanoparticle reversible networks grown on cell surface marker sites: application in diagnostics.

Authors:  Kyuwan Lee; Vladimir P Drachev; Joseph Irudayaraj
Journal:  ACS Nano       Date:  2011-02-11       Impact factor: 15.881

3.  Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.

Authors:  Hiroshi Hama; Hiroshi Kurokawa; Hiroyuki Kawano; Ryoko Ando; Tomomi Shimogori; Hisayori Noda; Kiyoko Fukami; Asako Sakaue-Sawano; Atsushi Miyawaki
Journal:  Nat Neurosci       Date:  2011-08-30       Impact factor: 24.884

4.  iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.

Authors:  Nicolas Renier; Zhuhao Wu; David J Simon; Jing Yang; Pablo Ariel; Marc Tessier-Lavigne
Journal:  Cell       Date:  2014-10-30       Impact factor: 41.582

5.  Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Fumiaki Kishino; Takehiro Tawara; Tomonobu M Watanabe; Chihiro Yokoyama; Hirotaka Onoe; Megumi Eguchi; Shun Yamaguchi; Takaya Abe; Hiroshi Kiyonari; Yoshihiro Shimizu; Atsushi Miyawaki; Hideo Yokota; Hiroki R Ueda
Journal:  Cell       Date:  2014-04-17       Impact factor: 41.582

6.  Dissecting the behavior and function of MBD3 in DNA methylation homeostasis by single-molecule spectroscopy and microscopy.

Authors:  Yi Cui; Joseph Irudayaraj
Journal:  Nucleic Acids Res       Date:  2015-03-09       Impact factor: 16.971

7.  Optical clearing at cellular level.

Authors:  Matti Kinnunen; Alexander V Bykov; Juho Tuorila; Tomi Haapalainen; Artashes V Karmenyan; Valery V Tuchin
Journal:  J Biomed Opt       Date:  2014-07       Impact factor: 3.170

8.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

9.  Growth of gold nanoparticles in human cells.

Authors:  Anshup Anshup; J Sai Venkataraman; Chandramouli Subramaniam; R Rajeev Kumar; Suma Priya; T R Santhosh Kumar; R V Omkumar; Annie John; T Pradeep
Journal:  Langmuir       Date:  2005-12-06       Impact factor: 3.882

10.  Quantitative imaging of single mRNA splice variants in living cells.

Authors:  Kyuwan Lee; Yi Cui; Luke P Lee; Joseph Irudayaraj
Journal:  Nat Nanotechnol       Date:  2014-04-20       Impact factor: 39.213

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  6 in total

1.  Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells.

Authors:  Yi Cui; Dehong Hu; Lye Meng Markillie; William B Chrisler; Matthew J Gaffrey; Charles Ansong; Lori Sussel; Galya Orr
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

Review 2.  Hydrogel-Tissue Chemistry: Principles and Applications.

Authors:  Viviana Gradinaru; Jennifer Treweek; Kristin Overton; Karl Deisseroth
Journal:  Annu Rev Biophys       Date:  2018-05-20       Impact factor: 12.981

3.  16S rRNA Monitoring Point-of-Care Magnetic Focus Lateral Flow Sensor.

Authors:  Wen Ren; Saeed Ahmad; Joseph Irudayaraj
Journal:  ACS Omega       Date:  2021-04-14

4.  Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy.

Authors:  Pushpak Bhandari; Gloriia Novikova; Craig J Goergen; Joseph Irudayaraj
Journal:  Sci Rep       Date:  2018-02-15       Impact factor: 4.379

5.  Epigenetic Modifications, and Alterations in Cell Cycle and Apoptosis Pathway in A549 Lung Carcinoma Cell Line upon Exposure to Perfluoroalkyl Substances.

Authors:  Musarrat Jabeen; Muhammad Fayyaz; Joseph Irudayaraj
Journal:  Toxics       Date:  2020-11-23

6.  Changes in Optical Properties of Plasmonic Nanoparticles in Cellular Environments are Modulated by Nanoparticle PEGylation and Serum Conditions.

Authors:  Allen L Chen; Meredith A Jackson; Adam Y Lin; Elizabeth R Figueroa; Ying S Hu; Emily R Evans; Vishwaratn Asthana; Joseph K Young; Rebekah A Drezek
Journal:  Nanoscale Res Lett       Date:  2016-06-18       Impact factor: 4.703

  6 in total

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