Literature DB >> 26914202

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images.

Alessandro Bria1,2,3, Giulio Iannello1, Leonardo Onofri1, Hanchuan Peng3.   

Abstract

Mesh:

Year:  2016        PMID: 26914202     DOI: 10.1038/nmeth.3767

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  6 in total

1.  BigDataViewer: visualization and processing for large image data sets.

Authors:  Tobias Pietzsch; Stephan Saalfeld; Stephan Preibisch; Pavel Tomancak
Journal:  Nat Methods       Date:  2015-06       Impact factor: 28.547

2.  Visualization and analysis of 3D microscopic images.

Authors:  Fuhui Long; Jianlong Zhou; Hanchuan Peng
Journal:  PLoS Comput Biol       Date:  2012-06-14       Impact factor: 4.475

3.  Quantitative neuroanatomy of all Purkinje cells with light sheet microscopy and high-throughput image analysis.

Authors:  Ludovico Silvestri; Marco Paciscopi; Paolo Soda; Filippo Biamonte; Giulio Iannello; Paolo Frasconi; Francesco S Pavone
Journal:  Front Neuroanat       Date:  2015-05-27       Impact factor: 3.856

4.  V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets.

Authors:  Hanchuan Peng; Zongcai Ruan; Fuhui Long; Julie H Simpson; Eugene W Myers
Journal:  Nat Biotechnol       Date:  2010-03-14       Impact factor: 54.908

5.  Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.

Authors:  Hanchuan Peng; Jianyong Tang; Hang Xiao; Alessandro Bria; Jianlong Zhou; Victoria Butler; Zhi Zhou; Paloma T Gonzalez-Bellido; Seung W Oh; Jichao Chen; Ananya Mitra; Richard W Tsien; Hongkui Zeng; Giorgio A Ascoli; Giulio Iannello; Michael Hawrylycz; Eugene Myers; Fuhui Long
Journal:  Nat Commun       Date:  2014-07-11       Impact factor: 14.919

6.  Advanced CLARITY for rapid and high-resolution imaging of intact tissues.

Authors:  Raju Tomer; Li Ye; Brian Hsueh; Karl Deisseroth
Journal:  Nat Protoc       Date:  2014-06-19       Impact factor: 13.491

  6 in total
  22 in total

Review 1.  Advances in Imaging Plant Cell Dynamics.

Authors:  George Komis; Dominik Novák; Miroslav Ovečka; Olga Šamajová; Jozef Šamaj
Journal:  Plant Physiol       Date:  2017-11-22       Impact factor: 8.340

2.  Multicolor quantitative confocal imaging cytometry.

Authors:  Daniel L Coutu; Konstantinos D Kokkaliaris; Leo Kunz; Timm Schroeder
Journal:  Nat Methods       Date:  2017-11-13       Impact factor: 28.547

Review 3.  Cellular maps of gastrointestinal organs: getting the most from tissue clearing.

Authors:  Cambrian Y Liu; D Brent Polk
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2020-05-18       Impact factor: 4.052

4.  Cellular anatomy of the mouse primary motor cortex.

Authors:  Rodrigo Muñoz-Castañeda; Brian Zingg; Katherine S Matho; Xiaoyin Chen; Quanxin Wang; Nicholas N Foster; Anan Li; Arun Narasimhan; Karla E Hirokawa; Bingxing Huo; Samik Bannerjee; Laura Korobkova; Chris Sin Park; Young-Gyun Park; Michael S Bienkowski; Uree Chon; Diek W Wheeler; Xiangning Li; Yun Wang; Maitham Naeemi; Peng Xie; Lijuan Liu; Kathleen Kelly; Xu An; Sarojini M Attili; Ian Bowman; Anastasiia Bludova; Ali Cetin; Liya Ding; Rhonda Drewes; Florence D'Orazi; Corey Elowsky; Stephan Fischer; William Galbavy; Lei Gao; Jesse Gillis; Peter A Groblewski; Lin Gou; Joel D Hahn; Joshua T Hatfield; Houri Hintiryan; Junxiang Jason Huang; Hideki Kondo; Xiuli Kuang; Philip Lesnar; Xu Li; Yaoyao Li; Mengkuan Lin; Darrick Lo; Judith Mizrachi; Stephanie Mok; Philip R Nicovich; Ramesh Palaniswamy; Jason Palmer; Xiaoli Qi; Elise Shen; Yu-Chi Sun; Huizhong W Tao; Wayne Wakemen; Yimin Wang; Shenqin Yao; Jing Yuan; Huiqing Zhan; Muye Zhu; Lydia Ng; Li I Zhang; Byung Kook Lim; Michael Hawrylycz; Hui Gong; James C Gee; Yongsoo Kim; Kwanghun Chung; X William Yang; Hanchuan Peng; Qingming Luo; Partha P Mitra; Anthony M Zador; Hongkui Zeng; Giorgio A Ascoli; Z Josh Huang; Pavel Osten; Julie A Harris; Hong-Wei Dong
Journal:  Nature       Date:  2021-10-06       Impact factor: 49.962

Review 5.  Smart imaging to empower brain-wide neuroscience at single-cell levels.

Authors:  Shuxia Guo; Jie Xue; Jian Liu; Xiangqiao Ye; Yichen Guo; Di Liu; Xuan Zhao; Feng Xiong; Xiaofeng Han; Hanchuan Peng
Journal:  Brain Inform       Date:  2022-05-11

6.  Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains.

Authors:  Shengdian Jiang; Yimin Wang; Lijuan Liu; Liya Ding; Zongcai Ruan; Hong-Wei Dong; Giorgio A Ascoli; Michael Hawrylycz; Hongkui Zeng; Hanchuan Peng
Journal:  Neuroinformatics       Date:  2022-02-19

Review 7.  Hydrogel-Tissue Chemistry: Principles and Applications.

Authors:  Viviana Gradinaru; Jennifer Treweek; Kristin Overton; Karl Deisseroth
Journal:  Annu Rev Biophys       Date:  2018-05-20       Impact factor: 12.981

8.  Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells.

Authors:  Nathan W Gouwens; Staci A Sorensen; Fahimeh Baftizadeh; Agata Budzillo; Brian R Lee; Tim Jarsky; Lauren Alfiler; Katherine Baker; Eliza Barkan; Kyla Berry; Darren Bertagnolli; Kris Bickley; Jasmine Bomben; Thomas Braun; Krissy Brouner; Tamara Casper; Kirsten Crichton; Tanya L Daigle; Rachel Dalley; Rebecca A de Frates; Nick Dee; Tsega Desta; Samuel Dingman Lee; Nadezhda Dotson; Tom Egdorf; Lauren Ellingwood; Rachel Enstrom; Luke Esposito; Colin Farrell; David Feng; Olivia Fong; Rohan Gala; Clare Gamlin; Amanda Gary; Alexandra Glandon; Jeff Goldy; Melissa Gorham; Lucas Graybuck; Hong Gu; Kristen Hadley; Michael J Hawrylycz; Alex M Henry; DiJon Hill; Madie Hupp; Sara Kebede; Tae Kyung Kim; Lisa Kim; Matthew Kroll; Changkyu Lee; Katherine E Link; Matthew Mallory; Rusty Mann; Michelle Maxwell; Medea McGraw; Delissa McMillen; Alice Mukora; Lindsay Ng; Lydia Ng; Kiet Ngo; Philip R Nicovich; Aaron Oldre; Daniel Park; Hanchuan Peng; Osnat Penn; Thanh Pham; Alice Pom; Zoran Popović; Lydia Potekhina; Ramkumar Rajanbabu; Shea Ransford; David Reid; Christine Rimorin; Miranda Robertson; Kara Ronellenfitch; Augustin Ruiz; David Sandman; Kimberly Smith; Josef Sulc; Susan M Sunkin; Aaron Szafer; Michael Tieu; Amy Torkelson; Jessica Trinh; Herman Tung; Wayne Wakeman; Katelyn Ward; Grace Williams; Zhi Zhou; Jonathan T Ting; Anton Arkhipov; Uygar Sümbül; Ed S Lein; Christof Koch; Zizhen Yao; Bosiljka Tasic; Jim Berg; Gabe J Murphy; Hongkui Zeng
Journal:  Cell       Date:  2020-11-12       Impact factor: 41.582

9.  High-throughput mapping of a whole rhesus monkey brain at micrometer resolution.

Authors:  Fang Xu; Yan Shen; Lufeng Ding; Chao-Yu Yang; Heng Tan; Hao Wang; Qingyuan Zhu; Rui Xu; Fengyi Wu; Yanyang Xiao; Cheng Xu; Qianwei Li; Peng Su; Li I Zhang; Hong-Wei Dong; Robert Desimone; Fuqiang Xu; Xintian Hu; Pak-Ming Lau; Guo-Qiang Bi
Journal:  Nat Biotechnol       Date:  2021-07-26       Impact factor: 68.164

10.  TDat: An Efficient Platform for Processing Petabyte-Scale Whole-Brain Volumetric Images.

Authors:  Yuxin Li; Hui Gong; Xiaoquan Yang; Jing Yuan; Tao Jiang; Xiangning Li; Qingtao Sun; Dan Zhu; Zhenyu Wang; Qingming Luo; Anan Li
Journal:  Front Neural Circuits       Date:  2017-07-31       Impact factor: 3.492

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