Literature DB >> 29786613

Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.

N Ramakrishnan1, Ryan P Bradley, Richard W Tourdot, Ravi Radhakrishnan.   

Abstract

At the micron scale, where cell organelles display an amazing complexity in their shape and organization, the physical properties of a biological membrane can be better-understood using continuum models subject to thermal (stochastic) undulations. Yet, the chief orchestrators of these complex and intriguing shapes are a specialized class of membrane associating often peripheral proteins called curvature remodeling proteins (CRPs) that operate at the molecular level through specific protein-lipid interactions. We review multiscale methodologies to model these systems at the molecular as well as at the mesoscopic and cellular scales, and also present a free energy perspective of membrane remodeling through the organization and assembly of CRPs. We discuss the morphological space of nearly planar to highly curved membranes, methods to include thermal fluctuations, and review studies that model such proteins as curvature fields to describe the emergent curved morphologies. We also discuss several mesoscale models applied to a variety of cellular processes, where the phenomenological parameters (such as curvature field strength) are often mapped to models of real systems based on molecular simulations. Much insight can be gained from the calculation of free energies of membranes states with protein fields, which enable accurate mapping of the state and parameter values at which the membrane undergoes morphological transformations such as vesiculation or tubulation. By tuning the strength, anisotropy, and spatial organization of the curvature-field, one can generate a rich array of membrane morphologies that are highly relevant to shapes of several cellular organelles. We review applications of these models to budding of vesicles commonly seen in cellular signaling and trafficking processes such as clathrin mediated endocytosis, sorting by the ESCRT protein complexes, and cellular exocytosis regulated by the exocyst complex. We discuss future prospects where such models can be combined with other models for cytoskeletal assembly, and discuss their role in understanding the effects of cell membrane tension and the mechanics of the extracellular microenvironment on cellular processes.

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Year:  2018        PMID: 29786613      PMCID: PMC6066392          DOI: 10.1088/1361-648X/aac702

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  168 in total

Review 1.  Dynamin and its role in membrane fission.

Authors:  J E Hinshaw
Journal:  Annu Rev Cell Dev Biol       Date:  2000       Impact factor: 13.827

2.  Anisotropic Membrane Curvature Sensing by Amphipathic Peptides.

Authors:  Jordi Gómez-Llobregat; Federico Elías-Wolff; Martin Lindén
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

3.  Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and F-BAR proteins.

Authors:  Toshiki Itoh; Kai S Erdmann; Aurelien Roux; Bianca Habermann; Hauke Werner; Pietro De Camilli
Journal:  Dev Cell       Date:  2005-12       Impact factor: 12.270

Review 4.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

5.  The BAR domain superfamily: membrane-molding macromolecules.

Authors:  Adam Frost; Vinzenz M Unger; Pietro De Camilli
Journal:  Cell       Date:  2009-04-17       Impact factor: 41.582

6.  Organization and Dynamics of Receptor Proteins in a Plasma Membrane.

Authors:  Heidi Koldsø; Mark S P Sansom
Journal:  J Am Chem Soc       Date:  2015-11-16       Impact factor: 15.419

Review 7.  Membrane budding and scission by the ESCRT machinery: it's all in the neck.

Authors:  James H Hurley; Phyllis I Hanson
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-30       Impact factor: 94.444

8.  Membrane nanotubes induced by aqueous phase separation and stabilized by spontaneous curvature.

Authors:  Yanhong Li; Reinhard Lipowsky; Rumiana Dimova
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

9.  Excess area dependent scaling behavior of nano-sized membrane tethers.

Authors:  N Ramakrishnan; K K Sreeja; Arpita Roychoudhury; David M Eckmann; Portonovo S Ayyaswamy; Tobias Baumgart; Thomas Pucadyil; Shivprasad Patil; Valerie M Weaver; Ravi Radhakrishnan
Journal:  Phys Biol       Date:  2018-01-11       Impact factor: 2.583

10.  A Hybrid Approach for Highly Coarse-grained Lipid Bilayer Models.

Authors:  Anand Srivastava; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2013-01-08       Impact factor: 6.006

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  9 in total

Review 1.  Regulation of actin assembly by PI(4,5)P2 and other inositol phospholipids: An update on possible mechanisms.

Authors:  Paul A Janmey; Robert Bucki; Ravi Radhakrishnan
Journal:  Biochem Biophys Res Commun       Date:  2018-08-13       Impact factor: 3.575

2.  Nonaxisymmetric Shapes of Biological Membranes from Locally Induced Curvature.

Authors:  Yannick A D Omar; Amaresh Sahu; Roger A Sauer; Kranthi K Mandadapu
Journal:  Biophys J       Date:  2020-07-31       Impact factor: 4.033

3.  A Review of Mechanics-Based Mesoscopic Membrane Remodeling Methods: Capturing Both the Physics and the Chemical Diversity.

Authors:  Gaurav Kumar; Satya Chaithanya Duggisetty; Anand Srivastava
Journal:  J Membr Biol       Date:  2022-10-05       Impact factor: 2.426

Review 4.  Insights into Membrane Curvature Sensing and Membrane Remodeling by Intrinsically Disordered Proteins and Protein Regions.

Authors:  Chandra Has; P Sivadas; Sovan Lal Das
Journal:  J Membr Biol       Date:  2022-04-22       Impact factor: 2.426

5.  Membrane signalosome: where biophysics meets systems biology.

Authors:  Sreeja K Kandy; Paul A Janmey; Ravi Radhakrishnan
Journal:  Curr Opin Syst Biol       Date:  2021-02-25

Review 6.  Computational Modeling of Realistic Cell Membranes.

Authors:  Siewert J Marrink; Valentina Corradi; Paulo C T Souza; Helgi I Ingólfsson; D Peter Tieleman; Mark S P Sansom
Journal:  Chem Rev       Date:  2019-01-09       Impact factor: 72.087

Review 7.  Lipids or Proteins: Who Is Leading the Dance at Membrane Contact Sites?

Authors:  Jules D Petit; Françoise Immel; Laurence Lins; Emmanuelle M Bayer
Journal:  Front Plant Sci       Date:  2019-02-21       Impact factor: 5.753

8.  FAM134B-RHD Protein Clustering Drives Spontaneous Budding of Asymmetric Membranes.

Authors:  Marc Siggel; Ramachandra M Bhaskara; Melanie K Moesser; Ivan D Ikić; Gerhard Hummer
Journal:  J Phys Chem Lett       Date:  2021-02-16       Impact factor: 6.475

9.  A survey of multiscale modeling: Foundations, historical milestones, current status, and future prospects.

Authors:  Ravi Radhakrishnan
Journal:  AIChE J       Date:  2020-09-18       Impact factor: 3.993

  9 in total

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