Literature DB >> 29116056

Excess area dependent scaling behavior of nano-sized membrane tethers.

N Ramakrishnan1, K K Sreeja, Arpita Roychoudhury, David M Eckmann, Portonovo S Ayyaswamy, Tobias Baumgart, Thomas Pucadyil, Shivprasad Patil, Valerie M Weaver, Ravi Radhakrishnan.   

Abstract

Thermal fluctuations in cell membranes manifest as an excess area ([Formula: see text]) which governs a multitude of physical process at the sub-micron scale. We present a theoretical framework, based on an in silico tether pulling method, which may be used to reliably estimate [Formula: see text] in live cells. We perform our simulations in two different thermodynamic ensembles: (i) the constant projected area and (ii) the constant frame tension ensembles and show the equivalence of our results in the two. The tether forces estimated from our simulations compare well with our experimental measurements for tethers extracted from ruptured GUVs and HeLa cells. We demonstrate the significance and validity of our method by showing that all our calculations performed in the initial tether formation regime (i.e. when the length of the tether is comparable to its radius) along with experiments of tether extraction in 15 different cell types collapse onto two unified scaling relationships mapping tether force, tether radius, bending stiffness κ, and membrane tension σ. We show that [Formula: see text] is an important determinant of the radius of the extracted tether, which is equal to the characteristic length [Formula: see text] for [Formula: see text], and is equal to [Formula: see text] for [Formula: see text]. We also find that the estimated excess area follows a linear scaling behavior that only depends on the true value of [Formula: see text] for the membrane, based on which we propose a self-consistent technique to estimate the range of excess membrane areas in a cell.

Entities:  

Mesh:

Year:  2018        PMID: 29116056      PMCID: PMC5832653          DOI: 10.1088/1478-3975/aa9905

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  48 in total

1.  Formation and interaction of membrane tubes.

Authors:  Imre Derényi; Frank Jülicher; Jacques Prost
Journal:  Phys Rev Lett       Date:  2002-05-28       Impact factor: 9.161

2.  Monte Carlo study of the frame, fluctuation and internal tensions of fluctuating membranes with fixed area.

Authors:  Hayato Shiba; Hiroshi Noguchi; Jean-Baptiste Fournier
Journal:  Soft Matter       Date:  2016-02-28       Impact factor: 3.679

Review 3.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

Review 4.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

5.  Undulation contributions to the area compressibility in lipid bilayer simulations.

Authors:  Qaiser Waheed; Olle Edholm
Journal:  Biophys J       Date:  2009-11-18       Impact factor: 4.033

6.  Effects of cholesterol on nano-mechanical properties of the living cell plasma membrane.

Authors:  Nima Khatibzadeh; Sharad Gupta; Brenda Farrell; William E Brownell; Bahman Anvari
Journal:  Soft Matter       Date:  2012-07-03       Impact factor: 3.679

7.  The conformation of fluid membranes: Monte Carlo simulations.

Authors:  D M Kroll; G Gompper
Journal:  Science       Date:  1992-02-21       Impact factor: 47.728

8.  Determination of bilayer membrane bending stiffness by tether formation from giant, thin-walled vesicles.

Authors:  L Bo; R E Waugh
Journal:  Biophys J       Date:  1989-03       Impact factor: 4.033

9.  Exo70 generates membrane curvature for morphogenesis and cell migration.

Authors:  Yuting Zhao; Jianglan Liu; Changsong Yang; Benjamin R Capraro; Tobias Baumgart; Ryan P Bradley; N Ramakrishnan; Xiaowei Xu; Ravi Radhakrishnan; Tatyana Svitkina; Wei Guo
Journal:  Dev Cell       Date:  2013-08-12       Impact factor: 12.270

10.  Human breast cancer invasion and aggression correlates with ECM stiffening and immune cell infiltration.

Authors:  I Acerbi; L Cassereau; I Dean; Q Shi; A Au; C Park; Y Y Chen; J Liphardt; E S Hwang; V M Weaver
Journal:  Integr Biol (Camb)       Date:  2015-05-11       Impact factor: 2.192

View more
  9 in total

1.  Soft Hyaluronic Gels Promote Cell Spreading, Stress Fibers, Focal Adhesion, and Membrane Tension by Phosphoinositide Signaling, Not Traction Force.

Authors:  Kalpana Mandal; Dikla Raz-Ben Aroush; Zachary Tobias Graber; Bin Wu; Chan Young Park; Jeffery J Fredberg; Wei Guo; Tobias Baumgart; Paul A Janmey
Journal:  ACS Nano       Date:  2018-12-14       Impact factor: 15.881

2.  Emergent membrane morphologies in relaxed and tense membranes in presence of reversible adhesive pinning interactions.

Authors:  Sreeja Kutti Kandy; Ravi Radhakrishnan
Journal:  Phys Biol       Date:  2019-10-21       Impact factor: 2.583

3.  Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.

Authors:  N Ramakrishnan; Ryan P Bradley; Richard W Tourdot; Ravi Radhakrishnan
Journal:  J Phys Condens Matter       Date:  2018-05-22       Impact factor: 2.333

4.  ECM dimensionality tunes actin tension to modulate endoplasmic reticulum function and spheroid phenotypes of mammary epithelial cells.

Authors:  FuiBoon Kai; Guanqing Ou; Richard W Tourdot; Connor Stashko; Guido Gaietta; Mark F Swift; Niels Volkmann; Alexandra F Long; Yulong Han; Hector H Huang; Jason J Northey; Andrew M Leidal; Virgile Viasnoff; David M Bryant; Wei Guo; Arun P Wiita; Ming Guo; Sophie Dumont; Dorit Hanein; Ravi Radhakrishnan; Valerie M Weaver
Journal:  EMBO J       Date:  2022-07-25       Impact factor: 14.012

5.  Data driven and biophysical insights into the regulation of trafficking vesicles by extracellular matrix stiffness.

Authors:  Kshitiz Parihar; Jonathan Nukpezah; Daniel V Iwamoto; Paul A Janmey; Ravi Radhakrishnan
Journal:  iScience       Date:  2022-07-04

6.  Membrane signalosome: where biophysics meets systems biology.

Authors:  Sreeja K Kandy; Paul A Janmey; Ravi Radhakrishnan
Journal:  Curr Opin Syst Biol       Date:  2021-02-25

7.  Influence of membrane-cortex linkers on the extrusion of membrane tubes.

Authors:  Alexandru Paraschiv; Thibaut J Lagny; Christian Vanhille Campos; Evelyne Coudrier; Patricia Bassereau; Anđela Šarić
Journal:  Biophys J       Date:  2021-01-16       Impact factor: 4.033

8.  Mechanical Tension of Biomembranes Can Be Measured by Super Resolution (STED) Microscopy of Force-Induced Nanotubes.

Authors:  Debjit Roy; Jan Steinkühler; Ziliang Zhao; Reinhard Lipowsky; Rumiana Dimova
Journal:  Nano Lett       Date:  2020-04-29       Impact factor: 11.189

9.  Probing lipid membrane bending mechanics using gold nanorod tracking.

Authors:  Mehdi Molaei; Sreeja Kutti Kandy; Zachary T Graber; Tobias Baumgart; Ravi Radhakrishnan; John C Crocker
Journal:  Phys Rev Res       Date:  2022-03-07
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.