Literature DB >> 26745422

Anisotropic Membrane Curvature Sensing by Amphipathic Peptides.

Jordi Gómez-Llobregat1, Federico Elías-Wolff2, Martin Lindén3.   

Abstract

Many proteins and peptides have an intrinsic capacity to sense and induce membrane curvature, and play crucial roles for organizing and remodeling cell membranes. However, the molecular driving forces behind these processes are not well understood. Here, we describe an approach to study curvature sensing by simulating the interactions of single molecules with a buckled lipid bilayer. We analyze three amphipathic antimicrobial peptides, a class of membrane-associated molecules that specifically target and destabilize bacterial membranes, and find qualitatively different sensing characteristics that would be difficult to resolve with other methods. Our findings provide evidence for direction-dependent curvature sensing mechanisms in amphipathic peptides and challenge existing theories of hydrophobic insertion. The buckling approach is generally applicable to a wide range of curvature-sensing molecules, and our results provide strong motivation to develop new experimental methods to track position and orientation of membrane proteins.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 26745422      PMCID: PMC4806213          DOI: 10.1016/j.bpj.2015.11.3512

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  59 in total

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Authors:  Chen Zhu; Sovan L Das; Tobias Baumgart
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

2.  Improved Parameters for the Martini Coarse-Grained Protein Force Field.

Authors:  Djurre H de Jong; Gurpreet Singh; W F Drew Bennett; Clement Arnarez; Tsjerk A Wassenaar; Lars V Schäfer; Xavier Periole; D Peter Tieleman; Siewert J Marrink
Journal:  J Chem Theory Comput       Date:  2012-11-28       Impact factor: 6.006

Review 3.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

4.  Membranes are more mosaic than fluid.

Authors:  Donald M Engelman
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

Review 5.  Rotational motions of macro-molecules by single-molecule fluorescence microscopy.

Authors:  Stephanie A Rosenberg; Margot E Quinlan; Joseph N Forkey; Yale E Goldman
Journal:  Acc Chem Res       Date:  2005-07       Impact factor: 22.384

6.  A general amphipathic alpha-helical motif for sensing membrane curvature.

Authors:  Guillaume Drin; Jean-François Casella; Romain Gautier; Thomas Boehmer; Thomas U Schwartz; Bruno Antonny
Journal:  Nat Struct Mol Biol       Date:  2007-01-14       Impact factor: 15.369

7.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

Review 8.  Thermodynamics and mechanics of membrane curvature generation and sensing by proteins and lipids.

Authors:  Tobias Baumgart; Benjamin R Capraro; Chen Zhu; Sovan L Das
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

9.  Membrane remodeling capacity of a vesicle-inducing glycosyltransferase.

Authors:  Changrong Ge; Jordi Gómez-Llobregat; Marcin J Skwark; Jean-Marie Ruysschaert; Ake Wieslander; Martin Lindén
Journal:  FEBS J       Date:  2014-07-21       Impact factor: 5.542

10.  Sensing membrane stresses by protein insertions.

Authors:  Felix Campelo; Michael M Kozlov
Journal:  PLoS Comput Biol       Date:  2014-04-10       Impact factor: 4.475

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  14 in total

1.  Amphipathic Helices-Wedge? Or Nae Nae?

Authors:  Edward Lyman; Alexander J Sodt
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  On the role of external force of actin filaments in the formation of tubular protrusions of closed membrane shapes with anisotropic membrane components.

Authors:  Luka Mesarec; Wojciech Góźdź; Samo Kralj; Miha Fošnarič; Samo Penič; Veronika Kralj-Iglič; Aleš Iglič
Journal:  Eur Biophys J       Date:  2017-05-09       Impact factor: 1.733

3.  Peptide-Lipid Interaction Sites Affect Vesicles' Responses to Antimicrobial Peptides.

Authors:  Yu Shi; Mingwei Wan; Lei Fu; Shan Zhang; Shiyuan Wang; Lianghui Gao; Weihai Fang
Journal:  Biophys J       Date:  2018-09-06       Impact factor: 4.033

4.  Mechanisms of negative membrane curvature sensing and generation by ESCRT III subunit Snf7.

Authors:  Binod Nepal; Aliasghar Sepehri; Themis Lazaridis
Journal:  Protein Sci       Date:  2020-03-18       Impact factor: 6.725

Review 5.  Guided by curvature: shaping cells by coupling curved membrane proteins and cytoskeletal forces.

Authors:  N S Gov
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-05-26       Impact factor: 6.237

6.  Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.

Authors:  N Ramakrishnan; Ryan P Bradley; Richard W Tourdot; Ravi Radhakrishnan
Journal:  J Phys Condens Matter       Date:  2018-05-22       Impact factor: 2.333

7.  A continuum membrane model can predict curvature sensing by helix insertion.

Authors:  Yiben Fu; Wade F Zeno; Jeanne C Stachowiak; Margaret E Johnson
Journal:  Soft Matter       Date:  2021-12-08       Impact factor: 3.679

Review 8.  Computational Modeling of Realistic Cell Membranes.

Authors:  Siewert J Marrink; Valentina Corradi; Paulo C T Souza; Helgi I Ingólfsson; D Peter Tieleman; Mark S P Sansom
Journal:  Chem Rev       Date:  2019-01-09       Impact factor: 72.087

9.  Molecular Motor Dnm1 Synergistically Induces Membrane Curvature To Facilitate Mitochondrial Fission.

Authors:  Michelle W Lee; Ernest Y Lee; Ghee Hwee Lai; Nolan W Kennedy; Ammon E Posey; Wujing Xian; Andrew L Ferguson; R Blake Hill; Gerard C L Wong
Journal:  ACS Cent Sci       Date:  2017-11-08       Impact factor: 14.553

10.  Curvature induction and sensing of the F-BAR protein Pacsin1 on lipid membranes via molecular dynamics simulations.

Authors:  Md Iqbal Mahmood; Hiroshi Noguchi; Kei-Ichi Okazaki
Journal:  Sci Rep       Date:  2019-10-10       Impact factor: 4.379

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