Literature DB >> 29770436

All I's on the RADAR: role of ADAR in gene regulation.

Galina Shevchenko1, Kevin V Morris1.   

Abstract

Adenosine to inosine (A-to-I) editing is the most abundant form of RNA modification in mammalian cells, which is catalyzed by adenosine deaminase acting on the double-stranded RNA (ADAR) protein family. A-to-I editing is currently known to be involved in the regulation of the immune system, RNA splicing, protein recoding, microRNA biogenesis, and formation of heterochromatin. Editing occurs within regions of double-stranded RNA, particularly within inverted Alu repeats, and is associated with many diseases including cancer, neurological disorders, and metabolic syndromes. However, the significance of RNA editing in a large portion of the transcriptome remains unknown. Here, we review the current knowledge about the prevalence and function of A-to-I editing by the ADAR protein family, focusing on its role in the regulation of gene expression. Furthermore, RNA editing-independent regulation of cellular processes by ADAR and the putative role(s) of this process in gene regulation will be discussed.
© 2018 Federation of European Biochemical Societies.

Entities:  

Keywords:  zzm321990ADARzzm321990; RNA editing; adenosine to inosine; non-coding RNA

Mesh:

Substances:

Year:  2018        PMID: 29770436      PMCID: PMC6327961          DOI: 10.1002/1873-3468.13093

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  147 in total

1.  mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

Authors:  Nicole-Claudia Meisner; Jörg Hackermüller; Volker Uhl; András Aszódi; Markus Jaritz; Manfred Auer
Journal:  Chembiochem       Date:  2004-10-04       Impact factor: 3.164

2.  A developmentally regulated activity that unwinds RNA duplexes.

Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1987-02-27       Impact factor: 41.582

3.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Authors:  Andranik Ivanov; Sebastian Memczak; Emanuel Wyler; Francesca Torti; Hagit T Porath; Marta R Orejuela; Michael Piechotta; Erez Y Levanon; Markus Landthaler; Christoph Dieterich; Nikolaus Rajewsky
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

4.  Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence.

Authors:  L J Peck; J C Wang
Journal:  Cell       Date:  1985-01       Impact factor: 41.582

5.  DNA editing in DNA/RNA hybrids by adenosine deaminases that act on RNA.

Authors:  Yuxuan Zheng; Claire Lorenzo; Peter A Beal
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

6.  Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates.

Authors:  Nurit Paz-Yaacov; Erez Y Levanon; Eviatar Nevo; Yaron Kinar; Alon Harmelin; Jasmine Jacob-Hirsch; Ninette Amariglio; Eli Eisenberg; Gideon Rechavi
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

7.  On the mechanism of induction of heterochromatin by the RNA-binding protein vigilin.

Authors:  Jing Zhou; Qiaoqiao Wang; Ling-Ling Chen; Gordon G Carmichael
Journal:  RNA       Date:  2008-07-22       Impact factor: 4.942

8.  Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods.

Authors:  Noa Liscovitch-Brauer; Shahar Alon; Hagit T Porath; Boaz Elstein; Ron Unger; Tamar Ziv; Arie Admon; Erez Y Levanon; Joshua J C Rosenthal; Eli Eisenberg
Journal:  Cell       Date:  2017-04-06       Impact factor: 41.582

9.  Structure-mediated modulation of mRNA abundance by A-to-I editing.

Authors:  Anneke Brümmer; Yun Yang; Tracey W Chan; Xinshu Xiao
Journal:  Nat Commun       Date:  2017-11-02       Impact factor: 14.919

10.  RADAR: a rigorously annotated database of A-to-I RNA editing.

Authors:  Gokul Ramaswami; Jin Billy Li
Journal:  Nucleic Acids Res       Date:  2013-10-25       Impact factor: 16.971

View more
  15 in total

1.  Occurrence and Functions of m6A and Other Covalent Modifications in Plant mRNA.

Authors:  Laura Arribas-Hernández; Peter Brodersen
Journal:  Plant Physiol       Date:  2019-11-20       Impact factor: 8.340

Review 2.  To protect and modify double-stranded RNA - the critical roles of ADARs in development, immunity and oncogenesis.

Authors:  Emily A Erdmann; Ananya Mahapatra; Priyanka Mukherjee; Boyoon Yang; Heather A Hundley
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-12-27       Impact factor: 8.250

Review 3.  RNA Epigenetics: Fine-Tuning Chromatin Plasticity and Transcriptional Regulation, and the Implications in Human Diseases.

Authors:  Amber Willbanks; Shaun Wood; Jason X Cheng
Journal:  Genes (Basel)       Date:  2021-04-22       Impact factor: 4.096

4.  pH dependence of C•A, G•A and A•A mismatches in the stem of precursor microRNA-31.

Authors:  Anita Kotar; Sicong Ma; Sarah C Keane
Journal:  Biophys Chem       Date:  2022-01-22       Impact factor: 3.628

5.  A-to-I editing of Malacoherpesviridae RNAs supports the antiviral role of ADAR1 in mollusks.

Authors:  Umberto Rosani; Chang-Ming Bai; Lorenzo Maso; Maxwell Shapiro; Miriam Abbadi; Stefania Domeneghetti; Chong-Ming Wang; Laura Cendron; Thomas MacCarthy; Paola Venier
Journal:  BMC Evol Biol       Date:  2019-07-23       Impact factor: 3.260

6.  LncRNA MEG3 acts a biomarker and regulates cell functions by targeting ADAR1 in colorectal cancer.

Authors:  Wei Wang; Ying Xie; Fei Chen; Xu Liu; Li-Li Zhong; Hai-Qiang Wang; Qing-Chang Li
Journal:  World J Gastroenterol       Date:  2019-08-07       Impact factor: 5.742

7.  Profiling neural editomes reveals a molecular mechanism to regulate RNA editing during development.

Authors:  Suba Rajendren; Alfa Dhakal; Pranathi Vadlamani; Jack Townsend; Sarah N Deffit; Heather A Hundley
Journal:  Genome Res       Date:  2020-12-18       Impact factor: 9.043

Review 8.  Genome editing technologies: CRISPR, LEAPER, RESTORE, ARCUT, SATI, and RESCUE.

Authors:  Senay Görücü Yilmaz
Journal:  EXCLI J       Date:  2021-01-04       Impact factor: 4.068

9.  Deletion of Endonuclease V suppresses chemically induced hepatocellular carcinoma.

Authors:  Xiang Yi Kong; Erik Sebastian Vik; Meh Sameen Nawaz; Natalia Berges; Tuva Børresdatter Dahl; Cathrine Vågbø; Rajikala Suganthan; Filip Segers; Sverre Holm; Ana Quiles-Jiménez; Ida Gregersen; Cathrine Fladeby; Pål Aukrust; Magnar Bjørås; Arne Klungland; Bente Halvorsen; Ingrun Alseth
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

10.  Genetic variation and microRNA targeting of A-to-I RNA editing fine tune human tissue transcriptomes.

Authors:  Eddie Park; Yan Jiang; Lili Hao; Jingyi Hui; Yi Xing
Journal:  Genome Biol       Date:  2021-03-09       Impact factor: 13.583

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.