Literature DB >> 29760063

Elastic coupling power stroke mechanism of the F1-ATPase molecular motor.

James L Martin1, Robert Ishmukhametov1, David Spetzler1, Tassilo Hornung1, Wayne D Frasch2.   

Abstract

The angular velocity profile of the 120° F1-ATPase power stroke was resolved as a function of temperature from 16.3 to 44.6 °C using a ΔμATP = -31.25 kBT at a time resolution of 10 μs. Angular velocities during the first 60° of the power stroke (phase 1) varied inversely with temperature, resulting in negative activation energies with a parabolic dependence. This is direct evidence that phase 1 rotation derives from elastic energy (spring constant, κ = 50 kBT·rad-2). Phase 2 of the power stroke had an enthalpic component indicating that additional energy input occurred to enable the γ-subunit to overcome energy stored by the spring after rotating beyond its 34° equilibrium position. The correlation between the probability distribution of ATP binding to the empty catalytic site and the negative Ea values of the power stroke during phase 1 suggests that this additional energy is derived from the binding of ATP to the empty catalytic site. A second torsion spring (κ = 150 kBT·rad-2; equilibrium position, 90°) was also evident that mitigated the enthalpic cost of phase 2 rotation. The maximum ΔGǂ was 22.6 kBT, and maximum efficiency was 72%. An elastic coupling mechanism is proposed that uses the coiled-coil domain of the γ-subunit rotor as a torsion spring during phase 1, and then as a crankshaft driven by ATP-binding-dependent conformational changes during phase 2 to drive the power stroke.

Entities:  

Keywords:  F-type ATP synthase; F1-ATPase; FOF1 ATP synthase; power stroke mechanism; single molecule

Mesh:

Substances:

Year:  2018        PMID: 29760063      PMCID: PMC5984535          DOI: 10.1073/pnas.1803147115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  67 in total

1.  Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis.

Authors:  R I Menz; J E Walker; A G Leslie
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

2.  Theory for rates, equilibrium constants, and Brønsted slopes in F1-ATPase single molecule imaging experiments.

Authors:  Sándor Volkán-Kacsó; Rudolph A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

3.  How subunit coupling produces the gamma-subunit rotary motion in F1-ATPase.

Authors:  Jingzhi Pu; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

4.  Simple mechanism whereby the F1-ATPase motor rotates with near-perfect chemomechanical energy conversion.

Authors:  Ei-ichiro Saita; Toshiharu Suzuki; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-20       Impact factor: 11.205

5.  Thermodynamic analysis of F1-ATPase rotary catalysis using high-speed imaging.

Authors:  Rikiya Watanabe; Yoshihiro Minagawa; Hiroyuki Noji
Journal:  Protein Sci       Date:  2014-10-21       Impact factor: 6.725

6.  Protonation-dependent stepped rotation of the F-type ATP synthase c-ring observed by single-molecule measurements.

Authors:  Seiga Yanagisawa; Wayne D Frasch
Journal:  J Biol Chem       Date:  2017-08-25       Impact factor: 5.157

7.  The structure of the membrane extrinsic region of bovine ATP synthase.

Authors:  David M Rees; Andrew G W Leslie; John E Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-07       Impact factor: 11.205

Review 8.  Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase.

Authors:  Wolfgang Junge; Hendrik Sielaff; Siegfried Engelbrecht
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

9.  Interactions among gamma R268, gamma Q269, and the beta subunit catch loop of Escherichia coli F1-ATPase are important for catalytic activity.

Authors:  Matthew D Greene; Wayne D Frasch
Journal:  J Biol Chem       Date:  2003-10-07       Impact factor: 5.157

10.  Structural evidence of a new catalytic intermediate in the pathway of ATP hydrolysis by F1-ATPase from bovine heart mitochondria.

Authors:  David M Rees; Martin G Montgomery; Andrew G W Leslie; John E Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

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  17 in total

1.  Data-guided Multi-Map variables for ensemble refinement of molecular movies.

Authors:  John W Vant; Daipayan Sarkar; Ellen Streitwieser; Giacomo Fiorin; Robert Skeel; Josh V Vermaas; Abhishek Singharoy
Journal:  J Chem Phys       Date:  2020-12-07       Impact factor: 3.488

Review 2.  Control of rotation of the F1FO-ATP synthase nanomotor by an inhibitory α-helix from unfolded ε or intrinsically disordered ζ and IF1 proteins.

Authors:  Francisco Mendoza-Hoffmann; Mariel Zarco-Zavala; Raquel Ortega; José J García-Trejo
Journal:  J Bioenerg Biomembr       Date:  2018-09-28       Impact factor: 2.945

3.  Method to extract multiple states in F1-ATPase rotation experiments from jump distributions.

Authors:  Sándor Volkán-Kacsó; Luan Q Le; Kaicheng Zhu; Haibin Su; Rudolph A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

4.  Insights into the origin of the high energy-conversion efficiency of F1-ATPase.

Authors:  Kwangho Nam; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-24       Impact factor: 11.205

5.  Interaction between γC87 and γR242 residues participates in energy coupling between catalysis and proton translocation in Escherichia coli ATP synthase.

Authors:  Yunxiang Li; Xinyou Ma; Joachim Weber
Journal:  Biochim Biophys Acta Bioenerg       Date:  2019-06-25       Impact factor: 3.991

6.  CryoFold: determining protein structures and data-guided ensembles from cryo-EM density maps.

Authors:  Mrinal Shekhar; Genki Terashi; Chitrak Gupta; Daipayan Sarkar; Gaspard Debussche; Nicholas J Sisco; Jonathan Nguyen; Arup Mondal; John Vant; Petra Fromme; Wade D Van Horn; Emad Tajkhorshid; Daisuke Kihara; Ken Dill; Alberto Perez; Abhishek Singharoy
Journal:  Matter       Date:  2021-09-22

Review 7.  F1FO ATP synthase molecular motor mechanisms.

Authors:  Wayne D Frasch; Zain A Bukhari; Seiga Yanagisawa
Journal:  Front Microbiol       Date:  2022-08-23       Impact factor: 6.064

8.  Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins.

Authors:  Wonmuk Hwang; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

Review 9.  Visualizing Mitochondrial FoF1-ATP Synthase as the Target of the Immunomodulatory Drug Bz-423.

Authors:  Ilka Starke; Gary D Glick; Michael Börsch
Journal:  Front Physiol       Date:  2018-07-04       Impact factor: 4.566

Review 10.  Structural Asymmetry and Kinetic Limping of Single Rotary F-ATP Synthases.

Authors:  Hendrik Sielaff; Seiga Yanagisawa; Wayne D Frasch; Wolfgang Junge; Michael Börsch
Journal:  Molecules       Date:  2019-01-30       Impact factor: 4.411

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