Literature DB >> 31341091

Insights into the origin of the high energy-conversion efficiency of F1-ATPase.

Kwangho Nam1,2, Martin Karplus3,4.   

Abstract

Our understanding of the rotary-coupling mechanism of F1-ATPase has been greatly enhanced in the last decade by advances in X-ray crystallography, single-molecular imaging, and theoretical models. Recently, Volkán-Kacsó and Marcus [S. Volkán-Kacsó, R. A. Marcus, Proc. Natl. Acad. Sci. U.S.A. 112, 14230 (2015)] presented an insightful thermodynamic model based on the Marcus reaction theory coupled with an elastic structural deformation term to explain the observed γ-rotation angle dependence of the adenosine triphosphate (ATP)/adenosine diphosphate (ADP) exchange rates of F1-ATPase. Although the model is successful in correlating single-molecule data, it is not in agreement with the available theoretical results. We describe a revision of the model, which leads to consistency with the simulation results and other experimental data on the F1-ATPase rotor compliance. Although the free energy liberated on ATP hydrolysis by F1-ATPase is rapidly dissipated as heat and so cannot contribute directly to the rotation, we show how, nevertheless, F1-ATPase functions near the maximum possible efficiency. This surprising result is a consequence of the differential binding of ATP and its hydrolysis products ADP and Pi along a well-defined pathway.

Entities:  

Keywords:  F1-ATPase; chemo–mechanical coupling; energy-conversion efficiency; free-energy profile

Year:  2019        PMID: 31341091      PMCID: PMC6690014          DOI: 10.1073/pnas.1906816116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

1.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.

Authors:  R Yasuda; H Noji; M Yoshida; K Kinosita; H Itoh
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

Review 2.  ATP synthase: what we know about ATP hydrolysis and what we do not know about ATP synthesis.

Authors:  J Weber; A E Senior
Journal:  Biochim Biophys Acta       Date:  2000-05-31

Review 3.  Molecular mechanisms of rotational catalysis in the F(0)F(1) ATP synthase.

Authors:  R K Nakamoto; C J Ketchum; P H Kuo; Y B Peskova; M K Al-Shawi
Journal:  Biochim Biophys Acta       Date:  2000-05-31

4.  ATP synthase and other motor proteins.

Authors:  W Junge
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

5.  Pause and rotation of F(1)-ATPase during catalysis.

Authors:  Y Hirono-Hara; H Noji; M Nishiura; E Muneyuki; K Y Hara; R Yasuda; K Kinosita; M Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

6.  Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Authors:  Katsuya Shimabukuro; Ryohei Yasuda; Eiro Muneyuki; Kiyotaka Y Hara; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

7.  Mechanically driven ATP synthesis by F1-ATPase.

Authors:  Hiroyasu Itoh; Akira Takahashi; Kengo Adachi; Hiroyuki Noji; Ryohei Yasuda; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Nature       Date:  2004-01-29       Impact factor: 49.962

8.  Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation.

Authors:  Takayuki Nishizaka; Kazuhiro Oiwa; Hiroyuki Noji; Shigeki Kimura; Eiro Muneyuki; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Nat Struct Mol Biol       Date:  2004-01-18       Impact factor: 15.369

9.  Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase.

Authors:  Rainer A Böckmann; Helmut Grubmüller
Journal:  Nat Struct Biol       Date:  2002-03

10.  A model for the cooperative free energy transduction and kinetics of ATP hydrolysis by F1-ATPase.

Authors:  Yi Qin Gao; Wei Yang; Rudolph A Marcus; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-18       Impact factor: 11.205

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  3 in total

1.  Method to extract multiple states in F1-ATPase rotation experiments from jump distributions.

Authors:  Sándor Volkán-Kacsó; Luan Q Le; Kaicheng Zhu; Haibin Su; Rudolph A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

2.  Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions.

Authors:  Pedro Ojeda-May; Ameeq Ui Mushtaq; Per Rogne; Apoorv Verma; Victor Ovchinnikov; Christin Grundström; Beata Dulko-Smith; Uwe H Sauer; Magnus Wolf-Watz; Kwangho Nam
Journal:  Biochemistry       Date:  2021-07-12       Impact factor: 3.321

3.  The nucleotide binding affinities of two critical conformations of Escherichia coli ATP synthase.

Authors:  Yunxiang Li; Neydy A Valdez; Nelli Mnatsakanyan; Joachim Weber
Journal:  Arch Biochem Biophys       Date:  2021-05-12       Impact factor: 4.114

  3 in total

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