Literature DB >> 29722831

The Neutral Theory in Light of Natural Selection.

Andrew D Kern1, Matthew W Hahn2.   

Abstract

In this perspective, we evaluate the explanatory power of the neutral theory of molecular evolution, 50 years after its introduction by Kimura. We argue that the neutral theory was supported by unreliable theoretical and empirical evidence from the beginning, and that in light of modern, genome-scale data, we can firmly reject its universality. The ubiquity of adaptive variation both within and between species means that a more comprehensive theory of molecular evolution must be sought.

Mesh:

Year:  2018        PMID: 29722831      PMCID: PMC5967545          DOI: 10.1093/molbev/msy092

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  90 in total

1.  Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome.

Authors:  Miguel Carneiro; Frank W Albert; José Melo-Ferreira; Nicolas Galtier; Philippe Gayral; Jose A Blanco-Aguiar; Rafael Villafuerte; Michael W Nachman; Nuno Ferrand
Journal:  Mol Biol Evol       Date:  2012-01-31       Impact factor: 16.240

2.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

3.  Protein polymorphism as a phase of molecular evolution.

Authors:  M Kimura; T Ohta
Journal:  Nature       Date:  1971-02-12       Impact factor: 49.962

Review 4.  Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation.

Authors:  Philip W Hedrick
Journal:  Mol Ecol       Date:  2013-08-01       Impact factor: 6.185

5.  Testing the neutral theory of molecular evolution with genomic data from Drosophila.

Authors:  Justin C Fay; Gerald J Wyckoff; Chung-I Wu
Journal:  Nature       Date:  2002-02-28       Impact factor: 49.962

6.  The genomic rate of adaptive amino acid substitution in Drosophila.

Authors:  Nicolas Bierne; Adam Eyre-Walker
Journal:  Mol Biol Evol       Date:  2004-03-24       Impact factor: 16.240

7.  Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome.

Authors:  Daniel R Schrider; Andrew D Kern
Journal:  Mol Biol Evol       Date:  2017-08-01       Impact factor: 16.240

8.  The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation.

Authors:  Jonathan K Pritchard; Joseph K Pickrell; Graham Coop
Journal:  Curr Biol       Date:  2010-02-23       Impact factor: 10.834

9.  High rate of recent transposable element-induced adaptation in Drosophila melanogaster.

Authors:  Josefa González; Kapa Lenkov; Mikhail Lipatov; J Michael Macpherson; Dmitri A Petrov
Journal:  PLoS Biol       Date:  2008-10-21       Impact factor: 8.029

10.  A population genetic signal of polygenic adaptation.

Authors:  Jeremy J Berg; Graham Coop
Journal:  PLoS Genet       Date:  2014-08-07       Impact factor: 5.917

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  42 in total

1.  Selection, Linkage, and Population Structure Interact To Shape Genetic Variation Among Threespine Stickleback Genomes.

Authors:  Thomas C Nelson; Johnathan G Crandall; Catherine M Ituarte; Julian M Catchen; William A Cresko
Journal:  Genetics       Date:  2019-06-18       Impact factor: 4.562

2.  Directional Selection Rather Than Functional Constraints Can Shape the G Matrix in Rapidly Adapting Asexuals.

Authors:  Kevin Gomez; Jason Bertram; Joanna Masel
Journal:  Genetics       Date:  2018-12-17       Impact factor: 4.562

3.  Toward an Evolutionarily Appropriate Null Model: Jointly Inferring Demography and Purifying Selection.

Authors:  Parul Johri; Brian Charlesworth; Jeffrey D Jensen
Journal:  Genetics       Date:  2020-03-09       Impact factor: 4.562

4.  How Good Are Predictions of the Effects of Selective Sweeps on Levels of Neutral Diversity?

Authors:  Brian Charlesworth
Journal:  Genetics       Date:  2020-10-26       Impact factor: 4.562

5.  Background Selection Does Not Mimic the Patterns of Genetic Diversity Produced by Selective Sweeps.

Authors:  Daniel R Schrider
Journal:  Genetics       Date:  2020-08-26       Impact factor: 4.562

6.  The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018.

Authors:  Jeffrey D Jensen; Bret A Payseur; Wolfgang Stephan; Charles F Aquadro; Michael Lynch; Deborah Charlesworth; Brian Charlesworth
Journal:  Evolution       Date:  2018-11-27       Impact factor: 3.694

7.  Resource diversity promotes among-individual diet variation, but not genomic diversity, in lake stickleback.

Authors:  Daniel I Bolnick; Kimberly M Ballare
Journal:  Ecol Lett       Date:  2020-01-09       Impact factor: 9.492

8.  Tumorigenesis as the Paradigm of Quasi-neutral Molecular Evolution.

Authors:  Bingjie Chen; Zongkun Shi; Qingjian Chen; Xu Shen; Darryl Shibata; Haijun Wen; Chung-I Wu
Journal:  Mol Biol Evol       Date:  2019-07-01       Impact factor: 16.240

Review 9.  Neutral syndrome.

Authors:  Armand M Leroi; Ben Lambert; James Rosindell; Xiangyu Zhang; Giorgos D Kokkoris
Journal:  Nat Hum Behav       Date:  2020-05-11

10.  Self-selection of evolutionary strategies: adaptive versus non-adaptive forces.

Authors:  Matthew Putnins; Ioannis P Androulakis
Journal:  Heliyon       Date:  2021-05-15
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