| Literature DB >> 29708200 |
Elizabeth J Sutton1, Erich P Huang2, Karen Drukker3, Elizabeth S Burnside4, Hui Li3, Jose M Net5, Arvind Rao6, Gary J Whitman7, Margarita Zuley8, Marie Ganott8, Ermelinda Bonaccio9, Maryellen L Giger3, Elizabeth A Morris1,10.
Abstract
BACKGROUND: In this study, we sought to investigate if computer-extracted magnetic resonance imaging (MRI) phenotypes of breast cancer could replicate human-extracted size and Breast Imaging-Reporting and Data System (BI-RADS) imaging phenotypes using MRI data from The Cancer Genome Atlas (TCGA) project of the National Cancer Institute.Entities:
Keywords: Breast cancer; Inter-observer variability; Machine learning; Magnetic resonance imaging; Radiomics
Year: 2017 PMID: 29708200 PMCID: PMC5909355 DOI: 10.1186/s41747-017-0025-2
Source DB: PubMed Journal: Eur Radiol Exp ISSN: 2509-9280
Fig. 1Schematic of breast magnetic resonance imaging human-extracted image phenotypes (HEIP) and computer-extracted imaging phenotypes (CEIP). TCIA The Cancer Imaging Archive
Patient and invasive breast cancer characteristics and axillary lymph node status
| Characteristics | Total ( |
|---|---|
| Mean age, years (range) | 53.6 (29–82) |
| Tumour diameter, cm (SD) | 2.41 (0.78–5.93) |
| Invasive breast | |
| Ductal carcinoma | 79 (86.8%) |
| Lobular carcinoma | 10 (11.0%) |
| Other | 2 (2.2%) |
| Oestrogen receptor | |
| Positive | 76 (83.5%) |
| Negative | 15 (16.5%) |
| Progesterone receptor | |
| Positive | 72 (79.1%) |
| Negative | 19 (20.9%) |
| HER2 receptor | |
| Positive | 14 (15.4%) |
| Negative | 49 (53.8%) |
| Unknown | 28 (30.8%) |
| Lymph node status | |
| Positive | 44 (48.4%) |
| Negative | 46 (50.5%) |
| Unknown | 1 (1.1%) |
| Stage | |
| I | 22 (24.2%) |
| II | 58 (63.7%) |
| III | 11 (12.1%) |
HER2 Human epidermal grow factor receptor 2
Numbers in parentheses represent percent for categorical variables unless otherwise indicated
Human-extracted imaging phenotypes and inter-observer agreement
| HEIP | Inter-observer agreement (95% CI) |
|---|---|
| Lesion size | π = 0.679 (0.561–0.736) |
| Shape | α = 0.527 (0.380–0.654) |
| Internal enhancement | α = 0.292 (0.147–0.433) |
| Margin | α = 0.561 (0.426–0.674) |
HEIP Human-extracted image phenotype
Association between human-extracted image phenotype and computer-extracted image phenotype
| Human-extracted assessment | Computer-extracted feature |
|
|---|---|---|
| Lesion size | Effective diameter | <10−12 |
| Surface area-to-volume ratio | <10−12 | |
| Maximum linear size | <10−12 | |
| Lesion volume | <10−12 | |
| Shape | Sphericity | 5.65 × 10−5 |
| Irregularity | 0.00398 | |
| Surface area-to-volume ratio | 0.363 | |
| Internal enhancement | Contrast | 0.378 |
| Correlation | 0.409 | |
| Difference in entropy | 0.353 | |
| Difference variance | 0.191 | |
| Energy | 0.186 | |
| Entropy | 0.194 | |
| Inverse difference moment | 0.466 | |
| IMC1 | 0.328 | |
| IMC2 | 0.340 | |
| Maximum correlation coefficient | 0.336 | |
| Sum average | 0.151 | |
| Sum entropy | 0.336 | |
| Sum variance | 0.702 | |
| Sum of squares | 0.297 | |
| Degree of margin spiculation | Mean margin sharpness | 0.292 |
| Variance margin sharpness | 0.227 | |
| Variance radial gradient histogram | 0.055 |
IMC Information measure of correlation
Fig. 2Comparison between human- and computer-measured maximum linear size
Fig. 3Comparison of computer- and human-extracted shapes
Fig. 4Sagittal fat-suppressed T1-weighted first post-contrast image of a breast cancer (arrow) where computer-extracted image phenotype (CEIP) sphericity is high and the radiologist assessed it as round/oval for shape. CEIP and human-extracted image phenotype are concordant
Fig. 5Axial fat-suppressed T1-weighted first post-contrast image of a breast cancer (arrow) where computer-extracted image phenotype (CEIP) sphericity is high and the radiologist assessed it as irregular for shape. CEIP and human-extracted image phenotype are discordant
Abilities of computer-extracted image phenotypes to replicate corresponding human-extracted phenotypes
| BI-RADS feature | Performance metric estimate with | CEIPs involved in chosen predictor/classifier |
|---|---|---|
| Lesion size | MSD 56.558 | Effective diameter |
| Lesion shape | AUC 0.720 | Sphericity |
| Internal enhancement | AUC 0.551 | Energy |
| Margin | τ = 0.143 | Variance radial gradient histogram |
IMC Information measure of correlation, MSD Mean squared deviation