Literature DB >> 22556315

Informatics in radiology: An open-source and open-access cancer biomedical informatics grid annotation and image markup template builder.

Pattanasak Mongkolwat1, David S Channin, Vladimir Kleper, Daniel L Rubin.   

Abstract

In a routine clinical environment or clinical trial, a case report form or structured reporting template can be used to quickly generate uniform and consistent reports. Annotation and image markup (AIM), a project supported by the National Cancer Institute's cancer biomedical informatics grid, can be used to collect information for a case report form or structured reporting template. AIM is designed to store, in a single information source, (a) the description of pixel data with use of markups or graphical drawings placed on the image, (b) calculation results (which may or may not be directly related to the markups), and (c) supplemental information. To facilitate the creation of AIM annotations with data entry templates, an AIM template schema and an open-source template creation application were developed to assist clinicians, image researchers, and designers of clinical trials to quickly create a set of data collection items, thereby ultimately making image information more readily accessible.

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Mesh:

Year:  2012        PMID: 22556315      PMCID: PMC3393884          DOI: 10.1148/rg.324115080

Source DB:  PubMed          Journal:  Radiographics        ISSN: 0271-5333            Impact factor:   5.333


  3 in total

1.  RadLex: a new method for indexing online educational materials.

Authors:  Curtis P Langlotz
Journal:  Radiographics       Date:  2006 Nov-Dec       Impact factor: 5.333

2.  The Annotation and Image Mark-up project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Daniel L Rubin
Journal:  Radiology       Date:  2009-12       Impact factor: 11.105

3.  The caBIG annotation and image Markup project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Kastubh Sepukar; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2009-03-18       Impact factor: 4.056

  3 in total
  10 in total

1.  Building and Querying RDF/OWL Database of Semantically Annotated Nuclear Medicine Images.

Authors:  Kyung Hoon Hwang; Haejun Lee; Geon Koh; Debra Willrett; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2017-02       Impact factor: 4.056

2.  Radiogenomics of clear cell renal cell carcinoma: preliminary findings of The Cancer Genome Atlas-Renal Cell Carcinoma (TCGA-RCC) Imaging Research Group.

Authors:  Atul B Shinagare; Raghu Vikram; Carl Jaffe; Oguz Akin; Justin Kirby; Erich Huang; John Freymann; Nisha I Sainani; Cheryl A Sadow; Tharakeswara K Bathala; Daniel L Rubin; Aytekin Oto; Matthew T Heller; Venkateswar R Surabhi; Venkat Katabathina; Stuart G Silverman
Journal:  Abdom Imaging       Date:  2015-08

3.  Radiogenomics of High-Grade Serous Ovarian Cancer: Multireader Multi-Institutional Study from the Cancer Genome Atlas Ovarian Cancer Imaging Research Group.

Authors:  Hebert Alberto Vargas; Erich P Huang; Yulia Lakhman; Joseph E Ippolito; Priya Bhosale; Vincent Mellnick; Atul B Shinagare; Maria Anello; Justin Kirby; Brenda Fevrier-Sullivan; John Freymann; C Carl Jaffe; Evis Sala
Journal:  Radiology       Date:  2017-06-22       Impact factor: 11.105

4.  Automated tracking of quantitative assessments of tumor burden in clinical trials.

Authors:  Daniel L Rubin; Debra Willrett; Martin J O'Connor; Cleber Hage; Camille Kurtz; Dilvan A Moreira
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

Review 5.  The National Cancer Informatics Program (NCIP) Annotation and Image Markup (AIM) Foundation model.

Authors:  Pattanasak Mongkolwat; Vladimir Kleper; Skip Talbot; Daniel Rubin
Journal:  J Digit Imaging       Date:  2014-12       Impact factor: 4.056

6.  Development and Reliability of a User-Friendly Multicenter Phenotyping Application for Hemorrhagic and Ischemic Stroke.

Authors:  Mayowa Owolabi; Godwin Ogbole; Rufus Akinyemi; Kehinde Salaam; Onoja Akpa; Pattanasak Mongkolwat; Adeleye Omisore; Atinuke Agunloye; Richard Efidi; Joseph Odo; Akintomiwa Makanjuola; Albert Akpalu; Fred Sarfo; Lukman Owolabi; Reginald Obiako; Kolawole Wahab; Emmanuel Sanya; Philip Adebayo; Morenikeji Komolafe; Abiodun Moshood Adeoye; Michael B Fawale; Joshua Akinyemi; Godwin Osaigbovo; Taofiki Sunmonu; Paul Olowoyo; Innocent Chukwuonye; Yahaya Obiabo; Philip Ibinaiye; Abdul Dambatta; Yaw Mensah; Salaam Abdul; Eunice Olabinri; Joyce Ikubor; Olalekan Oyinloye; Femi Odunlami; Ezinne Melikam; Raelle Saulson; Philip Kolo; Adesola Ogunniyi; Bruce Ovbiagele
Journal:  J Stroke Cerebrovasc Dis       Date:  2017-07-29       Impact factor: 2.136

7.  "Real-world" radiomics from multi-vendor MRI: an original retrospective study on the prediction of nodal status and disease survival in breast cancer, as an exemplar to promote discussion of the wider issues.

Authors:  Simon J Doran; Santosh Kumar; Matthew Orton; James d'Arcy; Fenna Kwaks; Elizabeth O'Flynn; Zaki Ahmed; Kate Downey; Mitch Dowsett; Nicholas Turner; Christina Messiou; Dow-Mu Koh
Journal:  Cancer Imaging       Date:  2021-05-20       Impact factor: 3.909

8.  Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set.

Authors:  Hui Li; Yitan Zhu; Elizabeth S Burnside; Erich Huang; Karen Drukker; Katherine A Hoadley; Cheng Fan; Suzanne D Conzen; Margarita Zuley; Jose M Net; Elizabeth Sutton; Gary J Whitman; Elizabeth Morris; Charles M Perou; Yuan Ji; Maryellen L Giger
Journal:  NPJ Breast Cancer       Date:  2016-05-11

9.  Breast MRI radiomics: comparison of computer- and human-extracted imaging phenotypes.

Authors:  Elizabeth J Sutton; Erich P Huang; Karen Drukker; Elizabeth S Burnside; Hui Li; Jose M Net; Arvind Rao; Gary J Whitman; Margarita Zuley; Marie Ganott; Ermelinda Bonaccio; Maryellen L Giger; Elizabeth A Morris
Journal:  Eur Radiol Exp       Date:  2017-11-21

10.  ePAD: An Image Annotation and Analysis Platform for Quantitative Imaging.

Authors:  Daniel L Rubin; Mete Ugur Akdogan; Cavit Altindag; Emel Alkim
Journal:  Tomography       Date:  2019-03
  10 in total

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