Literature DB >> 29650702

RNA buffers the phase separation behavior of prion-like RNA binding proteins.

Shovamayee Maharana1, Jie Wang1, Dimitrios K Papadopoulos1,2, Doris Richter1, Andrey Pozniakovsky1, Ina Poser1, Marc Bickle1, Sandra Rizk1,3, Jordina Guillén-Boixet1, Titus M Franzmann1, Marcus Jahnel1,4, Lara Marrone5, Young-Tae Chang6,7, Jared Sterneckert5, Pavel Tomancak1, Anthony A Hyman8, Simon Alberti8.   

Abstract

Prion-like RNA binding proteins (RBPs) such as TDP43 and FUS are largely soluble in the nucleus but form solid pathological aggregates when mislocalized to the cytoplasm. What keeps these proteins soluble in the nucleus and promotes aggregation in the cytoplasm is still unknown. We report here that RNA critically regulates the phase behavior of prion-like RBPs. Low RNA/protein ratios promote phase separation into liquid droplets, whereas high ratios prevent droplet formation in vitro. Reduction of nuclear RNA levels or genetic ablation of RNA binding causes excessive phase separation and the formation of cytotoxic solid-like assemblies in cells. We propose that the nucleus is a buffered system in which high RNA concentrations keep RBPs soluble. Changes in RNA levels or RNA binding abilities of RBPs cause aberrant phase transitions.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2018        PMID: 29650702      PMCID: PMC6091854          DOI: 10.1126/science.aar7366

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  28 in total

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Authors:  Yongdae Shin; Clifford P Brangwynne
Journal:  Science       Date:  2017-09-22       Impact factor: 47.728

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Authors:  Manuela Neumann; Deepak M Sampathu; Linda K Kwong; Adam C Truax; Matthew C Micsenyi; Thomas T Chou; Jennifer Bruce; Theresa Schuck; Murray Grossman; Christopher M Clark; Leo F McCluskey; Bruce L Miller; Eliezer Masliah; Ian R Mackenzie; Howard Feldman; Wolfgang Feiden; Hans A Kretzschmar; John Q Trojanowski; Virginia M-Y Lee
Journal:  Science       Date:  2006-10-06       Impact factor: 47.728

3.  Polar Positioning of Phase-Separated Liquid Compartments in Cells Regulated by an mRNA Competition Mechanism.

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Journal:  Cell       Date:  2016-09-01       Impact factor: 41.582

4.  Cytoplasmic mislocalization of TDP-43 is toxic to neurons and enhanced by a mutation associated with familial amyotrophic lateral sclerosis.

Authors:  Sami J Barmada; Gaia Skibinski; Erica Korb; Elizabeth J Rao; Jane Y Wu; Steven Finkbeiner
Journal:  J Neurosci       Date:  2010-01-13       Impact factor: 6.167

5.  An aberrant phase transition of stress granules triggered by misfolded protein and prevented by chaperone function.

Authors:  Daniel Mateju; Titus M Franzmann; Avinash Patel; Andrii Kopach; Edgar E Boczek; Shovamayee Maharana; Hyun O Lee; Serena Carra; Anthony A Hyman; Simon Alberti
Journal:  EMBO J       Date:  2017-04-04       Impact factor: 11.598

6.  Structural determinants of the cellular localization and shuttling of TDP-43.

Authors:  Youhna M Ayala; Paola Zago; Andrea D'Ambrogio; Ya-Fei Xu; Leonard Petrucelli; Emanuele Buratti; Francisco E Baralle
Journal:  J Cell Sci       Date:  2008-10-28       Impact factor: 5.285

7.  Inhibition of TDP-43 aggregation by nucleic acid binding.

Authors:  Yi-Chen Huang; Ku-Feng Lin; Ruei-Yu He; Pang-Hsien Tu; Jiri Koubek; Yin-Chih Hsu; Joseph Jen-Tse Huang
Journal:  PLoS One       Date:  2013-05-30       Impact factor: 3.240

8.  Loss and gain of Drosophila TDP-43 impair synaptic efficacy and motor control leading to age-related neurodegeneration by loss-of-function phenotypes.

Authors:  Danielle C Diaper; Yoshitsugu Adachi; Ben Sutcliffe; Dickon M Humphrey; Christopher J H Elliott; Alan Stepto; Zoe N Ludlow; Lies Vanden Broeck; Patrick Callaerts; Bart Dermaut; Ammar Al-Chalabi; Christopher E Shaw; Iain M Robinson; Frank Hirth
Journal:  Hum Mol Genet       Date:  2013-01-10       Impact factor: 6.150

9.  Toxic gain of function from mutant FUS protein is crucial to trigger cell autonomous motor neuron loss.

Authors:  Jelena Scekic-Zahirovic; Oliver Sendscheid; Hajer El Oussini; Mélanie Jambeau; Ying Sun; Sina Mersmann; Marina Wagner; Stéphane Dieterlé; Jérome Sinniger; Sylvie Dirrig-Grosch; Kevin Drenner; Marie-Christine Birling; Jinsong Qiu; Yu Zhou; Hairi Li; Xiang-Dong Fu; Caroline Rouaux; Tatyana Shelkovnikova; Anke Witting; Albert C Ludolph; Friedemann Kiefer; Erik Storkebaum; Clotilde Lagier-Tourenne; Luc Dupuis
Journal:  EMBO J       Date:  2016-03-07       Impact factor: 11.598

Review 10.  Prion-like domains as epigenetic regulators, scaffolds for subcellular organization, and drivers of neurodegenerative disease.

Authors:  Zachary M March; Oliver D King; James Shorter
Journal:  Brain Res       Date:  2016-03-18       Impact factor: 3.252

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  292 in total

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Review 4.  Relation Between Stress Granules and Cytoplasmic Protein Aggregates Linked to Neurodegenerative Diseases.

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Journal:  Curr Neurol Neurosci Rep       Date:  2018-11-08       Impact factor: 5.081

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6.  Liquid-Liquid Phase Separation in Physiology and Pathophysiology of the Nervous System.

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Review 7.  Generic nature of the condensed states of proteins.

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Journal:  Nat Cell Biol       Date:  2021-06-09       Impact factor: 28.824

8.  Dysregulation of TDP-43 intracellular localization and early onset ALS are associated with a TARDBP S375G variant.

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Review 9.  The molecular language of membraneless organelles.

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10.  Dynamics of oligomer and amyloid fibril formation by yeast prion Sup35 observed by high-speed atomic force microscopy.

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