Literature DB >> 29618219

Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis.

Adam James Waite1,2, Nicholas W Frankel1,3, Thierry Emonet1,4.   

Abstract

Living cells detect and process external signals using signaling pathways that are affected by random fluctuations. These variations cause the behavior of individual cells to fluctuate over time (behavioral variability) and generate phenotypic differences between genetically identical individuals (phenotypic diversity). These two noise sources reduce our ability to predict biological behavior because they diversify cellular responses to identical signals. Here, we review recent experimental and theoretical advances in understanding the mechanistic origin and functional consequences of such variation in Escherichia coli chemotaxis-a well-understood model of signal transduction and behavior. After briefly summarizing the architecture and logic of the chemotaxis system, we discuss determinants of behavior and chemotactic performance of individual cells. Then, we review how cell-to-cell differences in protein abundance map onto differences in individual chemotactic abilities and how phenotypic variability affects the performance of the population. We conclude with open questions to be addressed by future research.

Entities:  

Keywords:  adaptation; chemical sensing; fluctuations; navigation; signal transduction; single-cell behavior

Mesh:

Year:  2018        PMID: 29618219      PMCID: PMC5989721          DOI: 10.1146/annurev-biophys-062215-010954

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  147 in total

1.  Noninvasive inference of the molecular chemotactic response using bacterial trajectories.

Authors:  Jean-Baptiste Masson; Guillaume Voisinne; Jerome Wong-Ng; Antonio Celani; Massimo Vergassola
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

2.  Design principles of a bacterial signalling network.

Authors:  Markus Kollmann; Linda Løvdok; Kilian Bartholomé; Jens Timmer; Victor Sourjik
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

3.  An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

4.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

5.  The effect of long-range hydrodynamic interaction on the swimming of a single bacterium.

Authors:  Suddhashil Chattopadhyay; Xiao-Lun Wu
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

6.  Coordinated reversal of flagellar motors on a single Escherichia coli cell.

Authors:  Shun Terasawa; Hajime Fukuoka; Yuichi Inoue; Takashi Sagawa; Hiroto Takahashi; Akihiko Ishijima
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

7.  Response rescaling in bacterial chemotaxis.

Authors:  Milena D Lazova; Tanvir Ahmed; Domenico Bellomo; Roman Stocker; Thomas S Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-01       Impact factor: 11.205

Review 8.  Microfluidics expanding the frontiers of microbial ecology.

Authors:  Roberto Rusconi; Melissa Garren; Roman Stocker
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

9.  Coordination of flagella on filamentous cells of Escherichia coli.

Authors:  A Ishihara; J E Segall; S M Block; H C Berg
Journal:  J Bacteriol       Date:  1983-07       Impact factor: 3.490

10.  Discrimination between different methylation states of chemotaxis receptor Tar by receptor methyltransferase CheR.

Authors:  Eduardo Perez; Ann H West; Ann M Stock; Snezana Djordjevic
Journal:  Biochemistry       Date:  2004-02-03       Impact factor: 3.162

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  16 in total

1.  Coordination of gene expression with cell size enables Escherichia coli to efficiently maintain motility across conditions.

Authors:  Tomoya Honda; Jonas Cremer; Leonardo Mancini; Zhongge Zhang; Teuta Pilizota; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-06       Impact factor: 12.779

Review 2.  The ecological roles of bacterial chemotaxis.

Authors:  Johannes M Keegstra; Francesco Carrara; Roman Stocker
Journal:  Nat Rev Microbiol       Date:  2022-03-15       Impact factor: 78.297

3.  Escherichia coli chemotaxis is information limited.

Authors:  H H Mattingly; K Kamino; B B Machta; T Emonet
Journal:  Nat Phys       Date:  2021-11-25       Impact factor: 19.684

4.  Hexameric rings of the scaffolding protein CheW enhance response sensitivity and cooperativity in Escherichia coli chemoreceptor arrays.

Authors:  Germán E Piñas; Michael D DeSantis; C Keith Cassidy; John S Parkinson
Journal:  Sci Signal       Date:  2022-01-25       Impact factor: 9.517

5.  Azorhizobium caulinodans Chemotaxis Is Controlled by an Unusual Phosphorelay Network.

Authors:  Emily N Kennedy; Sarah A Barr; Xiaolin Liu; Luke R Vass; Yanan Liu; Zhihong Xie; Robert B Bourret
Journal:  J Bacteriol       Date:  2021-11-29       Impact factor: 3.476

6.  Spatial self-organization resolves conflicts between individuality and collective migration.

Authors:  X Fu; S Kato; J Long; H H Mattingly; C He; D C Vural; S W Zucker; T Emonet
Journal:  Nat Commun       Date:  2018-06-05       Impact factor: 14.919

7.  Connecting single-cell properties to collective behavior in multiple wild isolates of the Enterobacter cloacae complex.

Authors:  Sean Lim; Xiaokan Guo; James Q Boedicker
Journal:  PLoS One       Date:  2019-04-04       Impact factor: 3.240

8.  Adaptive tuning of cell sensory diversity without changes in gene expression.

Authors:  K Kamino; J M Keegstra; J Long; T Emonet; T S Shimizu
Journal:  Sci Adv       Date:  2020-11-13       Impact factor: 14.136

9.  A Multi-Scale Approach to Modeling E. coli Chemotaxis.

Authors:  Eran Agmon; Ryan K Spangler
Journal:  Entropy (Basel)       Date:  2020-09-29       Impact factor: 2.524

10.  Multi-bit Boolean model for chemotactic drift of Escherichia coli.

Authors:  Anuj Deshpande; Sibendu Samanta; Sutharsan Govindarajan; Ritwik Kumar Layek
Journal:  IET Syst Biol       Date:  2020-12       Impact factor: 1.615

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