Literature DB >> 24773019

Microfluidics expanding the frontiers of microbial ecology.

Roberto Rusconi1, Melissa Garren, Roman Stocker.   

Abstract

Microfluidics has significantly contributed to the expansion of the frontiers of microbial ecology over the past decade by allowing researchers to observe the behaviors of microbes in highly controlled microenvironments, across scales from a single cell to mixed communities. Spatially and temporally varying distributions of organisms and chemical cues that mimic natural microbial habitats can now be established by exploiting physics at the micrometer scale and by incorporating structures with specific geometries and materials. In this article, we review applications of microfluidics that have resulted in insightful discoveries on fundamental aspects of microbial life, ranging from growth and sensing to cell-cell interactions and population dynamics. We anticipate that this flexible multidisciplinary technology will continue to facilitate discoveries regarding the ecology of microorganisms and help uncover strategies to control microbial processes such as biofilm formation and antibiotic resistance.

Entities:  

Keywords:  antibiotics; gradients; microenvironments; population dynamics; single-cell analysis; surface interactions

Mesh:

Year:  2014        PMID: 24773019      PMCID: PMC4076152          DOI: 10.1146/annurev-biophys-051013-022916

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  105 in total

1.  Contributions of microbial biofilms to ecosystem processes in stream mesocosms.

Authors:  Tom J Battin; Louis A Kaplan; J Denis Newbold; Claude M E Hansen
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

2.  Motion to form a quorum.

Authors:  Sungsu Park; Peter M Wolanin; Emil A Yuzbashyan; Pascal Silberzan; Jeffry B Stock; Robert H Austin
Journal:  Science       Date:  2003-07-11       Impact factor: 47.728

3.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

4.  Effects of population density and chemical environment on the behavior of Escherichia coli in shallow temperature gradients.

Authors:  Mahmut Demir; Carine Douarche; Anna Yoney; Albert Libchaber; Hanna Salman
Journal:  Phys Biol       Date:  2011-11-04       Impact factor: 2.583

5.  A microfluidic chemostat for experiments with bacterial and yeast cells.

Authors:  Alex Groisman; Caroline Lobo; HoJung Cho; J Kyle Campbell; Yann S Dufour; Ann M Stevens; Andre Levchenko
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

6.  Swimming in circles: motion of bacteria near solid boundaries.

Authors:  Eric Lauga; Willow R DiLuzio; George M Whitesides; Howard A Stone
Journal:  Biophys J       Date:  2005-10-20       Impact factor: 4.033

7.  Formation of bacterial streamers during filtration in microfluidic systems.

Authors:  Aurélie Marty; Christine Roques; Christel Causserand; Patrice Bacchin
Journal:  Biofouling       Date:  2012       Impact factor: 3.209

Review 8.  Microfluidic devices for measuring gene network dynamics in single cells.

Authors:  Matthew R Bennett; Jeff Hasty
Journal:  Nat Rev Genet       Date:  2009-08-11       Impact factor: 53.242

9.  Spatial localization of bacteria controls coagulation of human blood by 'quorum acting'.

Authors:  Christian J Kastrup; James Q Boedicker; Andrei P Pomerantsev; Mahtab Moayeri; Yao Bian; Rebecca R Pompano; Timothy R Kline; Patricia Sylvestre; Feng Shen; Stephen H Leppla; Wei-Jen Tang; Rustem F Ismagilov
Journal:  Nat Chem Biol       Date:  2008-12       Impact factor: 15.040

10.  Microfluidic-driven viral infection on cell cultures: Theoretical and experimental study.

Authors:  Elisa Cimetta; Mauro Franzoso; Marta Trevisan; Elena Serena; Alessandro Zambon; Stefano Giulitti; Luisa Barzon; Nicola Elvassore
Journal:  Biomicrofluidics       Date:  2012-06-04       Impact factor: 2.800

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  58 in total

Review 1.  Live from under the lens: exploring microbial motility with dynamic imaging and microfluidics.

Authors:  Kwangmin Son; Douglas R Brumley; Roman Stocker
Journal:  Nat Rev Microbiol       Date:  2015-12       Impact factor: 60.633

Review 2.  The mechanical world of bacteria.

Authors:  Alexandre Persat; Carey D Nadell; Minyoung Kevin Kim; Francois Ingremeau; Albert Siryaporn; Knut Drescher; Ned S Wingreen; Bonnie L Bassler; Zemer Gitai; Howard A Stone
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

3.  Use of a high-throughput in vitro microfluidic system to develop oral multi-species biofilms.

Authors:  Derek S Samarian; Nicholas S Jakubovics; Ting L Luo; Alexander H Rickard
Journal:  J Vis Exp       Date:  2014-12-01       Impact factor: 1.355

4.  Extracellular matrix structure governs invasion resistance in bacterial biofilms.

Authors:  Carey D Nadell; Knut Drescher; Ned S Wingreen; Bonnie L Bassler
Journal:  ISME J       Date:  2015-01-20       Impact factor: 10.302

Review 5.  Review: Microbial analysis in dielectrophoretic microfluidic systems.

Authors:  Renny E Fernandez; Ali Rohani; Vahid Farmehini; Nathan S Swami
Journal:  Anal Chim Acta       Date:  2017-03-06       Impact factor: 6.558

6.  Three-dimensional Printing of Thermoplastic Materials to Create Automated Syringe Pumps with Feedback Control for Microfluidic Applications.

Authors:  Ming-Cheng Chen; John R Lake; Keith C Heyde; Warren C Ruder
Journal:  J Vis Exp       Date:  2018-08-30       Impact factor: 1.355

Review 7.  Bacterial quorum sensing in complex and dynamically changing environments.

Authors:  Sampriti Mukherjee; Bonnie L Bassler
Journal:  Nat Rev Microbiol       Date:  2019-06       Impact factor: 60.633

8.  Live imaging of root-bacteria interactions in a microfluidics setup.

Authors:  Hassan Massalha; Elisa Korenblum; Sergey Malitsky; Orr H Shapiro; Asaph Aharoni
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-27       Impact factor: 11.205

9.  Live Cell Analysis of Shear Stress on Pseudomonas aeruginosa Using an Automated Higher-Throughput Microfluidic System.

Authors:  Arin L Sutlief; Helena Valquier-Flynn; Christina Wilson; Marco Perez; Hunter Kleinschmidt; Brett J Schofield; Elizabeth Delmain; Andrea E Holmes; Christopher D Wentworth
Journal:  J Vis Exp       Date:  2019-01-16       Impact factor: 1.355

Review 10.  Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities.

Authors:  Xinyun Cao; Joshua J Hamilton; Ophelia S Venturelli
Journal:  Biochemistry       Date:  2018-11-20       Impact factor: 3.162

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