Literature DB >> 29600992

Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo".

Caleb A Lareau1,2,3, Kendell Clement1,3,4,5, Jonathan Y Hsu1,6, Vikram Pattanayak1,4, J Keith Joung1,4, Martin J Aryee1,2,3,4, Luca Pinello1,3,4.   

Abstract

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Year:  2018        PMID: 29600992      PMCID: PMC7784551          DOI: 10.1038/nmeth.4541

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  7 in total

1.  Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells.

Authors:  Daesik Kim; Sangsu Bae; Jeongbin Park; Eunji Kim; Seokjoong Kim; Hye Ryeong Yu; Jinha Hwang; Jong-Il Kim; Jin-Soo Kim
Journal:  Nat Methods       Date:  2015-02-09       Impact factor: 28.547

2.  DNA Repair Profiling Reveals Nonrandom Outcomes at Cas9-Mediated Breaks.

Authors:  Megan van Overbeek; Daniel Capurso; Matthew M Carter; Matthew S Thompson; Elizabeth Frias; Carsten Russ; John S Reece-Hoyes; Christopher Nye; Scott Gradia; Bastien Vidal; Jiashun Zheng; Gregory R Hoffman; Christopher K Fuller; Andrew P May
Journal:  Mol Cell       Date:  2016-08-04       Impact factor: 17.970

3.  Unexpected mutations after CRISPR-Cas9 editing in vivo.

Authors:  Kellie A Schaefer; Wen-Hsuan Wu; Diana F Colgan; Stephen H Tsang; Alexander G Bassuk; Vinit B Mahajan
Journal:  Nat Methods       Date:  2017-05-30       Impact factor: 28.547

4.  Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing.

Authors:  Adrian Veres; Bridget S Gosis; Qiurong Ding; Ryan Collins; Ashok Ragavendran; Harrison Brand; Serkan Erdin; Chad A Cowan; Michael E Talkowski; Kiran Musunuru
Journal:  Cell Stem Cell       Date:  2014-07-03       Impact factor: 24.633

5.  Off-target mutations are rare in Cas9-modified mice.

Authors:  Vivek Iyer; Bin Shen; Wensheng Zhang; Alex Hodgkins; Thomas Keane; Xingxu Huang; William C Skarnes
Journal:  Nat Methods       Date:  2015-06       Impact factor: 28.547

6.  GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.

Authors:  Shengdar Q Tsai; Zongli Zheng; Nhu T Nguyen; Matthew Liebers; Ved V Topkar; Vishal Thapar; Nicolas Wyvekens; Cyd Khayter; A John Iafrate; Long P Le; Martin J Aryee; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-12-16       Impact factor: 54.908

7.  High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity.

Authors:  Vikram Pattanayak; Steven Lin; John P Guilinger; Enbo Ma; Jennifer A Doudna; David R Liu
Journal:  Nat Biotechnol       Date:  2013-08-11       Impact factor: 54.908

  7 in total
  11 in total

Review 1.  Technologies and Computational Analysis Strategies for CRISPR Applications.

Authors:  Kendell Clement; Jonathan Y Hsu; Matthew C Canver; J Keith Joung; Luca Pinello
Journal:  Mol Cell       Date:  2020-07-02       Impact factor: 17.970

2.  Optimizing CRISPR/Cas9 technology for precise correction of the Fgfr3-G374R mutation in achondroplasia in mice.

Authors:  Kai Miao; Xin Zhang; Sek Man Su; Jianming Zeng; Zebin Huang; Un In Chan; Xiaoling Xu; Chu-Xia Deng
Journal:  J Biol Chem       Date:  2018-11-28       Impact factor: 5.157

Review 3.  Drug addiction: a curable mental disorder?

Authors:  Jian-Feng Liu; Jun-Xu Li
Journal:  Acta Pharmacol Sin       Date:  2018-10-31       Impact factor: 6.150

4.  Unexpected mutations were expected and unrelated to CRISPR-Cas9 activity.

Authors:  Lluis Montoliu; C Bruce A Whitelaw
Journal:  Transgenic Res       Date:  2018-05-31       Impact factor: 2.788

5.  The importance of genotype identity, genetic heterogeneity, and bioinformatic handling for properly assessing genomic variation in transgenic plants.

Authors:  Jean-Michel Michno; Robert M Stupar
Journal:  BMC Biotechnol       Date:  2018-06-01       Impact factor: 2.563

6.  Illuminating the genome-wide activity of genome editors for safe and effective therapeutics.

Authors:  Yong Cheng; Shengdar Q Tsai
Journal:  Genome Biol       Date:  2018-12-22       Impact factor: 13.583

7.  Off- and on-target effects of genome editing in mouse embryos.

Authors:  Shinya Ayabe; Kenichi Nakashima; Atsushi Yoshiki
Journal:  J Reprod Dev       Date:  2018-12-06       Impact factor: 2.214

8.  Optimized CRISPR guide RNA design for two high-fidelity Cas9 variants by deep learning.

Authors:  Daqi Wang; Chengdong Zhang; Bei Wang; Bin Li; Qiang Wang; Dong Liu; Hongyan Wang; Yan Zhou; Leming Shi; Feng Lan; Yongming Wang
Journal:  Nat Commun       Date:  2019-09-19       Impact factor: 14.919

Review 9.  Variability in Genome Editing Outcomes: Challenges for Research Reproducibility and Clinical Safety.

Authors:  Lydia Teboul; Yann Herault; Sara Wells; Waseem Qasim; Guillaume Pavlovic
Journal:  Mol Ther       Date:  2020-03-20       Impact factor: 11.454

10.  Trio deep-sequencing does not reveal unexpected off-target and on-target mutations in Cas9-edited rhesus monkeys.

Authors:  Xin Luo; Yaoxi He; Chao Zhang; Xiechao He; Lanzhen Yan; Min Li; Ting Hu; Yan Hu; Jin Jiang; Xiaoyu Meng; Weizhi Ji; Xudong Zhao; Ping Zheng; Shuhua Xu; Bing Su
Journal:  Nat Commun       Date:  2019-12-04       Impact factor: 14.919

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