Literature DB >> 29589973

Engineered Ribosomes for Basic Science and Synthetic Biology.

Anne E d'Aquino1,2, Do Soon Kim2,3, Michael C Jewett1,2,3.   

Abstract

The ribosome is the cell's factory for protein synthesis. With protein synthesis rates of up to 20 amino acids per second and at an accuracy of 99.99%, the extraordinary catalytic capacity of the bacterial translation machinery has attracted extensive efforts to engineer, reconstruct, and repurpose it for biochemical studies and novel functions. Despite these efforts, the potential for harnessing the translation apparatus to manufacture bio-based products beyond natural limits remains underexploited, and fundamental constraints on the chemistry that the ribosome's RNA-based active site can carry out are unknown. This review aims to cover the past and present advances in ribosome design and engineering to understand the fundamental biology of the ribosome to facilitate the construction of synthetic manufacturing machines. The prospects for the development of engineered, or designer, ribosomes for novel polymer synthesis are reviewed, future challenges are considered, and promising advances in a variety of applications are discussed.

Entities:  

Keywords:  cell-free; engineering; peptides; ribosome; tethered ribosome; translation

Mesh:

Substances:

Year:  2018        PMID: 29589973     DOI: 10.1146/annurev-chembioeng-060817-084129

Source DB:  PubMed          Journal:  Annu Rev Chem Biomol Eng        ISSN: 1947-5438            Impact factor:   11.059


  16 in total

1.  A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli.

Authors:  Benjamin J Des Soye; Vincent R Gerbasi; Paul M Thomas; Neil L Kelleher; Michael C Jewett
Journal:  Cell Chem Biol       Date:  2019-11-06       Impact factor: 8.116

2.  Mutational characterization and mapping of the 70S ribosome active site.

Authors:  Anne E d'Aquino; Tasfia Azim; Nikolay A Aleksashin; Adam J Hockenberry; Antje Krüger; Michael C Jewett
Journal:  Nucleic Acids Res       Date:  2020-03-18       Impact factor: 16.971

Review 3.  Incorporation of nonstandard amino acids into proteins: principles and applications.

Authors:  Tianwen Wang; Chen Liang; Hongjv Xu; Yafei An; Sha Xiao; Mengyuan Zheng; Lu Liu; Lei Nie
Journal:  World J Microbiol Biotechnol       Date:  2020-04-08       Impact factor: 3.312

4.  Deducing putative ancestral forms of GNRA/receptor interactions from the ribosome.

Authors:  Erin R Calkins; Paul Zakrevsky; Vasken L Keleshian; Eduardo G Aguilar; Cody Geary; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2019-01-10       Impact factor: 16.971

Review 5.  Engineering the Translational Machinery for Biotechnology Applications.

Authors:  Tianwen Wang; Chen Liang; Yafei An; Sa Xiao; Hongjv Xu; Mengyuan Zheng; Lu Liu; Gaozhan Wang; Lei Nie
Journal:  Mol Biotechnol       Date:  2020-04       Impact factor: 2.695

Review 6.  Incorporation of non-standard amino acids into proteins: challenges, recent achievements, and emerging applications.

Authors:  Xing Jin; Oh-Jin Park; Seok Hoon Hong
Journal:  Appl Microbiol Biotechnol       Date:  2019-02-21       Impact factor: 4.813

7.  Fail-safe genetic codes designed to intrinsically contain engineered organisms.

Authors:  Jonathan Calles; Isaac Justice; Detravious Brinkley; Alexa Garcia; Drew Endy
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

Review 8.  Advances and Challenges in Cell-Free Incorporation of Unnatural Amino Acids Into Proteins.

Authors:  Wei Gao; Eunhee Cho; Yingying Liu; Yuan Lu
Journal:  Front Pharmacol       Date:  2019-05-29       Impact factor: 5.810

9.  Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.

Authors:  Sergey V Melnikov; Nelli F Khabibullina; Elisabeth Mairhofer; Oscar Vargas-Rodriguez; Noah M Reynolds; Ronald Micura; Dieter Söll; Yury S Polikanov
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

10.  Engineered ribosomes with tethered subunits for expanding biological function.

Authors:  Erik D Carlson; Anne E d'Aquino; Do Soon Kim; Emily M Fulk; Kim Hoang; Teresa Szal; Alexander S Mankin; Michael C Jewett
Journal:  Nat Commun       Date:  2019-09-02       Impact factor: 14.919

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