Literature DB >> 1932568

Assignment of protein NMR spectra in the light of homonuclear 3D spectroscopy: an automatable procedure based on 3D TOCSY-TOCSY and 3D TOCSY-NOESY.

H Oschkinat1, T A Holak, C Cieslar.   

Abstract

Automated assignment of proteins is greatly simplified using data from 3D-nmr spectra. A strategy is presented which makes use of 3D-TOCSY-TOCSY and 3D-TOCSY-NOESY; its potential is demonstrated with the example of the spectra of BPTI. The discussion of the potential of 3D-nmr includes the introduction of a simple graph for the description of the information content of multidimensional nmr spectra.

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Year:  1991        PMID： 1932568     DOI： 10.1002/bip.360310615

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


  12 in total

1.  Smartnotebook: a semi-automated approach to protein sequential NMR resonance assignments.

Authors:  Carolyn M Slupsky; Robert F Boyko; Valerie K Booth; Brian D Sykes
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

2.  IBIS--a tool for automated sequential assignment of protein spectra from triple resonance experiments.

Authors:  Sven G Hyberts; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2003-08       Impact factor: 2.835

3.  Tools for the automated assignment of high-resolution three-dimensional protein NMR spectra based on pattern recognition techniques.

Authors:  D Croft; J Kemmink; K P Neidig; H Oschkinat
Journal:  J Biomol NMR       Date:  1997-10       Impact factor: 2.835

4.  Graphical interpretation of Boolean operators for protein NMR assignments.

Authors:  Dries Verdegem; Klaas Dijkstra; Xavier Hanoulle; Guy Lippens
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

5.  CAMRA: chemical shift based computer aided protein NMR assignments.

Authors:  W Gronwald; L Willard; T Jellard; R F Boyko; K Rajarathnam; D S Wishart; F D Sönnichsen; B D Sykes
Journal:  J Biomol NMR       Date:  1998-10       Impact factor: 2.835

6.  AURELIA, a program for computer-aided analysis of multidimensional NMR spectra.

Authors:  K P Neidig; M Geyer; A Görler; C Antz; R Saffrich; W Beneicke; H R Kalbitzer
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Graph-theoretical assignment of secondary structure in multidimensional protein NMR spectra: application to the lac repressor headpiece.

Authors:  E C van Geerestein-Ujah; M Slijper; R Boelens; R Kaptein
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

8.  Automated sequencing of amino acid spin systems in proteins using multidimensional HCC(CO)NH-TOCSY spectroscopy and constraint propagation methods from artificial intelligence.

Authors:  D Zimmerman; C Kulikowski; L Wang; B Lyons; G T Montelione
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

9.  Evaluation of an algorithm for the automated sequential assignment of protein backbone resonances: a demonstration of the connectivity tracing assignment tools (CONTRAST) software package.

Authors:  J B Olson; J L Markley
Journal:  J Biomol NMR       Date:  1994-05       Impact factor: 2.835

Review 10.  Non-Uniform and Absolute Minimal Sampling for High-Throughput Multidimensional NMR Applications.

Authors:  Dawei Li; Alexandar L Hansen; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Chemistry       Date:  2018-06-19       Impact factor: 5.236
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