Literature DB >> 15546754

Covariance NMR spectroscopy by singular value decomposition.

Nikola Trbovic1, Serge Smirnov, Fengli Zhang, Rafael Brüschweiler.   

Abstract

Covariance NMR is demonstrated for homonuclear 2D NMR data collected using the hypercomplex and TPPI methods. Absorption mode 2D spectra are obtained by application of the square-root operation to the covariance matrices. The resulting spectra closely resemble the 2D Fourier transformation spectra, except that they are fully symmetric with the spectral resolution along both dimensions determined by the favorable resolution achievable along omega2. An efficient method is introduced for the calculation of the square root of the covariance spectrum by applying a singular value decomposition (SVD) directly to the mixed time-frequency domain data matrix. Applications are shown for 2D NOESY and 2QF-COSY data sets and computational benchmarks are given for data matrix dimensions typically encountered in practice. The SVD implementation makes covariance NMR amenable to routine applications.

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Year:  2004        PMID: 15546754     DOI: 10.1016/j.jmr.2004.08.007

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  26 in total

1.  Covariance NMR in higher dimensions: application to 4D NOESY spectroscopy of proteins.

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Journal:  J Biomol NMR       Date:  2007-09-18       Impact factor: 2.835

2.  Z-matrix formalism for quantitative noise assessment of covariance nuclear magnetic resonance spectra.

Authors:  David A Snyder; Arindam Ghosh; Fengli Zhang; Thomas Szyperski; Rafael Brüschweiler
Journal:  J Chem Phys       Date:  2008-09-14       Impact factor: 3.488

3.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

4.  Effortless assignment with 4D covariance sequential correlation maps.

Authors:  Bradley J Harden; Subrata H Mishra; Dominique P Frueh
Journal:  J Magn Reson       Date:  2015-09-21       Impact factor: 2.229

5.  Deterministic schedules for robust and reproducible non-uniform sampling in multidimensional NMR.

Authors:  Matthew T Eddy; David Ruben; Robert G Griffin; Judith Herzfeld
Journal:  J Magn Reson       Date:  2011-12-10       Impact factor: 2.229

6.  Covariance J-resolved spectroscopy: Theory and application in vivo.

Authors:  Zohaib Iqbal; Gaurav Verma; Anand Kumar; M Albert Thomas
Journal:  NMR Biomed       Date:  2017-05-08       Impact factor: 4.044

7.  Covariance nuclear magnetic resonance methods for obtaining protein assignments and novel correlations.

Authors:  Aswani K Kancherla; Dominique P Frueh
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2018-09-16       Impact factor: 0.481

8.  A major determinant of cyclophilin dependence and cyclosporine susceptibility of hepatitis C virus identified by a genetic approach.

Authors:  Feng Yang; Jason M Robotham; Henry Grise; Stephen Frausto; Vanesa Madan; Margarita Zayas; Ralf Bartenschlager; Margaret Robinson; Andrew E Greenstein; Anita Nag; Timothy M Logan; Ewa Bienkiewicz; Hengli Tang
Journal:  PLoS Pathog       Date:  2010-09-23       Impact factor: 6.823

9.  High-resolution homonuclear 2D NMR of carbon-13 enriched metabolites and their mixtures.

Authors:  Fengli Zhang; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Magn Reson       Date:  2012-09-24       Impact factor: 2.229

10.  Web server suite for complex mixture analysis by covariance NMR.

Authors:  Fengli Zhang; Steven L Robinette; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Magn Reson Chem       Date:  2009-12       Impact factor: 2.447

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