| Literature DB >> 29564148 |
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Abstract
Entities:
Year: 2017 PMID: 29564148 PMCID: PMC5851150
Source DB: PubMed Journal: J Virus Erad ISSN: 2055-6640
Characteristics of study population
| HIV-negative ( | HIV-positive | |
|---|---|---|
| Age in years, mean (SD) | 44.1 (9.4) | 41.1 (7.3) |
| Parity, mean (range) | 2.8 (0–12) | 2.2 (0–7) |
| Education to grade 12 or above | 31% | 21% |
| In full-time employment | 32% | 29% |
| With cell phone | 92% | 92% |
| With internet access | 38% | 37% |
More than 80% of HIV-positive women were receiving cART.
Figure 1.Prevalence of high-risk HPV in clinician-collected cervical samples using real-time PCR for 14 targeted HPV types in five channels: HPV 16; HPV 18/45; HPV 31/33/35/52/58; HPV 51/59; HPV 39/56/66/68
Screening performance characteristics of Xpert® HPV in the study population
| Screen positive | Sensitivity | Specificity | Positive predictive value | |
|---|---|---|---|---|
| HPV channels 16, 18/45, 31/33/35/52/58, 51/59, 39/56/66/68: | ||||
| Clinician-collected samples: | ||||
| HIV-negative women | 16.1% | 88.0% | 89.2% | Not available |
| HIV-positive women | 49.2% | 95.0% | 66.4% | Not available |
| Self-collected samples: | ||||
| HIV-negative women | 25.9% | 92.0% | 77.4% | Not available |
| HIV-positive women | 60.9% | 95.8% | 51.7% | Not available |
| HPV channels 16, 18/45, 31/33/35/52/58: | ||||
| Clinician-collected samples: | ||||
| HIV-negative women | 9.7% | 88.0% | 93.0% | 29.4% |
| HIV-positive women | 41.6% | 92.6% | 71.6% | 34.8% |
| Self-collected samples: | ||||
| HIV-negative women | Not available | 92.0% | 84.5% | Not available |
| HIV-positive women | Not available | 91.6% | 57.8% | Not available |
Figure 1.Age-standardised cervical cancer incidence and mortality rates by world area. Reproduced from [1]
Strengths and weaknesses of Xpert® HPV clinical testing in Africa
| Strengths:
Ease of use enabling several staff to carry out tests Partial genotyping, valuable for epidemiology 58-minute test turnaround allowing 2-hour clinic turnaround in a hospital setting Reproducible quality control with positive and negative internal controls introduced after every 20 specimens Potential for cheaper alternative collection media | Weaknesses:
Procurement and transport Use of plastics Disposal of cartridges, media and large collection pots Appropriate temperature of clinic, transport to lab, and storage Cost – all HPV tests are still too expensive for routine use |
Prevalence of high-risk HPV in routinely screened women, using Xpert® HPV in accordance with manufacturer's instructions in VIA clinics in Nkhoma Hospital, Central Malawi [7]
| Year of collection | 2014 | 2015 to June | Total (%) | % of positives |
|---|---|---|---|---|
| Number tested | 615 | 148 | 763 | |
| With valid results | 604 | 146 | 750(98.3) | |
| HPV negative | 484 | 117 | 601(80.1) | |
| HPV positive | 120 | 29 | 149(19.9) | |
| HPV types: | ||||
| HPV 16 | 30 | 6 | 36(4.8) | 24.2 |
| HPV 18/45 | 27 | 9 | 36(4.8) | 24.2 |
| HPV ‘other’ | 77 | 19 | 96(12.8) | 64.4 |
| HPV 31/33/35/52/58 | 47 | 14 | 61(8.1) | 40.1 |
| HPV 51/59 | 15 | 2 | 17(2.3) | 11.4 |
| HPV 39/56/66/68 | 21 | 6 | 27(3.6) | 18.9 |
| Multiple infections | 17 | 7 | 24(3.2) | 16.1 |
Results of paired Xpert® HPV testing with different media
| PreservCyt® (PC): | HPV+ | HPV- | Agreement | Kappa [95% CI] |
|---|---|---|---|---|
| Saline ( | 96.2% | 88.5% [72.9–100] | ||
| HPV+ | 10 | 0 | ||
| HPV- | 2 | 40 | ||
| Natrol® ( | 96.8% | 88.4% [75.5–100] | ||
| HPV+ | 14 | 2 | ||
| HPV- | 1 | 76 | ||
| NOVAprep HQ+ Orange® ( | 96.9% | 92.2% [83.5–100] | ||
| HPV+ | 25 | 1 | ||
| HPV- | 2 | 68 | ||
HPV assays for use with renewed NCSP: technical and laboratory considerations. (Data is comparative to a validated reference assay)
| HPV assay | Technical | Laboratory | ||
|---|---|---|---|---|
| Target | Clinical sensitivity | Clinical specificity | Capacity (8 h) | |
| Roche cobas® 4800 | DNA: L1 | 0.99 | 1.00 | 288 |
| Abbott RealTi | DNA: L1 | 1.00 | 1.01 | 288 |
| BD Onclarity™ | DNA: E6/E7 | 0.99 | 0.99 | 90 |
| Seegene Anyplex™ II | DNA: L1 | 1.00 | 0.99 | 288 |
| Cepheid GeneXpert® | DNA: E6/E7 | 1.00 | 1.00 | 7–560 |
Comparison of results of cobas® and Xpert® in testing self-collected samples in under-screened women
| cobas® HPV test | ||||||
|---|---|---|---|---|---|---|
| HPV16 | HPV18 | Other HPV | Negative | Invalid | ||
| HPV16 | 1 | 0 | 0 | 0 | 1 | |
| HPV18/45 | 0 | 1 | 2 | 0 | 0 | |
| Other HPV | 0 | 0 | 5 | 0 | 1 | |
| Negative | 0 | 0 | 0 | 40 | 3 | |
| Invalid | 0 | 0 | 0 | 0 | 4 | |