Literature DB >> 29525927

Frequent ploidy changes in growing yeast cultures.

Yaniv Harari1, Yoav Ram2, Martin Kupiec3.   

Abstract

Ploidy is considered a very stable cellular characteristic. Although rare, changes in ploidy play important roles in the acquisition of long-term adaptations. Since these duplications allow the subsequent loss of individual chromosomes and accumulation of mutations, changes in ploidy can also cause genomic instability, and have been found to promote cancer. Despite the importance of the subject, measuring the rate of whole-genome duplications has proven extremely challenging. We have recently measured the rate of diploidization in yeast using long-term, in-lab experiments. We found that spontaneous diploidization occurs frequently, by two different mechanisms: endoreduplication and mating type switching. Despite its common occurrence, spontaneous diploidization is usually selected against, although it can be advantageous under some stressful conditions. Our results have implications for the understanding of evolutionary processes, as well as for the use of yeast cells in biotechnological applications.

Entities:  

Keywords:  Diploid; Endoreduplication; Genome duplication; Haploid; Heterothalism; Homologous recombination; Homothallism; Ploidy; Saccharomyces cerevisiae

Mesh:

Year:  2018        PMID: 29525927     DOI: 10.1007/s00294-018-0823-y

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  40 in total

1.  Tor complex 1 controls telomere length by affecting the level of Ku.

Authors:  Lior Ungar; Yaniv Harari; Amos Toren; Martin Kupiec
Journal:  Curr Biol       Date:  2011-12-08       Impact factor: 10.834

2.  Ploidy tug-of-war: Evolutionary and genetic environments influence the rate of ploidy drive in a human fungal pathogen.

Authors:  Aleeza C Gerstein; Heekyung Lim; Judith Berman; Meleah A Hickman
Journal:  Evolution       Date:  2017-03-24       Impact factor: 3.694

3.  Identifying and assessing the impact of wine acid-related genes in yeast.

Authors:  Boredi S Chidi; Debra Rossouw; Florian F Bauer
Journal:  Curr Genet       Date:  2015-06-04       Impact factor: 3.886

4.  Chromosomal duplication is a transient evolutionary solution to stress.

Authors:  Avihu H Yona; Yair S Manor; Rebecca H Herbst; Gal H Romano; Amir Mitchell; Martin Kupiec; Yitzhak Pilpel; Orna Dahan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-29       Impact factor: 11.205

5.  Mutational effects depend on ploidy level: all else is not equal.

Authors:  Aleeza C Gerstein
Journal:  Biol Lett       Date:  2012-10-10       Impact factor: 3.703

Review 6.  Exploiting budding yeast natural variation for industrial processes.

Authors:  Francisco A Cubillos
Journal:  Curr Genet       Date:  2016-04-16       Impact factor: 3.886

Review 7.  Taming wild yeast: potential of conventional and nonconventional yeasts in industrial fermentations.

Authors:  Jan Steensels; Kevin J Verstrepen
Journal:  Annu Rev Microbiol       Date:  2014-04-24       Impact factor: 15.500

Review 8.  The consequences of tetraploidy and aneuploidy.

Authors:  Zuzana Storchova; Christian Kuffer
Journal:  J Cell Sci       Date:  2008-12-01       Impact factor: 5.285

9.  Affected chromosome homeostasis and genomic instability of clonal yeast cultures.

Authors:  Jagoda Adamczyk; Anna Deregowska; Anita Panek; Ewelina Golec; Anna Lewinska; Maciej Wnuk
Journal:  Curr Genet       Date:  2015-11-18       Impact factor: 3.886

10.  Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts.

Authors:  Brigida Gallone; Jan Steensels; Troels Prahl; Leah Soriaga; Veerle Saels; Beatriz Herrera-Malaver; Adriaan Merlevede; Miguel Roncoroni; Karin Voordeckers; Loren Miraglia; Clotilde Teiling; Brian Steffy; Maryann Taylor; Ariel Schwartz; Toby Richardson; Christopher White; Guy Baele; Steven Maere; Kevin J Verstrepen
Journal:  Cell       Date:  2016-09-08       Impact factor: 41.582

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  12 in total

Review 1.  Nuclear migration in budding yeasts: position before division.

Authors:  Neha Varshney; Kaustuv Sanyal
Journal:  Curr Genet       Date:  2019-05-31       Impact factor: 3.886

Review 2.  RNA insertion in DNA as the imprint moiety: the fission yeast paradigm.

Authors:  Jagmohan Singh
Journal:  Curr Genet       Date:  2019-05-10       Impact factor: 3.886

Review 3.  An evolving view of copy number variants.

Authors:  Stephanie Lauer; David Gresham
Journal:  Curr Genet       Date:  2019-05-10       Impact factor: 3.886

Review 4.  Recent insights into the evolution of mutation rates in yeast.

Authors:  Robert H Melde; Kevin Bao; Nathaniel P Sharp
Journal:  Curr Opin Genet Dev       Date:  2022-07-11       Impact factor: 4.665

5.  Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics.

Authors:  Grace Avecilla; Julie N Chuong; Fangfei Li; Gavin Sherlock; David Gresham; Yoav Ram
Journal:  PLoS Biol       Date:  2022-05-27       Impact factor: 9.593

6.  Spontaneous whole-genome duplication restores fertility in interspecific hybrids.

Authors:  Guillaume Charron; Souhir Marsit; Mathieu Hénault; Hélène Martin; Christian R Landry
Journal:  Nat Commun       Date:  2019-09-11       Impact factor: 14.919

7.  Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates.

Authors:  Gustavo Bravo Ruiz; Zoe K Ross; Eilidh Holmes; Silke Schelenz; Neil A R Gow; Alexander Lorenz
Journal:  Curr Genet       Date:  2019-04-24       Impact factor: 3.886

8.  MAT heterozygosity and the second sterility barrier in the reproductive isolation of Saccharomyces species.

Authors:  Matthias Sipiczki; Zsuzsa Antunovics; Adrienne Szabo
Journal:  Curr Genet       Date:  2020-04-30       Impact factor: 3.886

Review 9.  Genetic Engineering and Synthetic Genomics in Yeast to Understand Life and Boost Biotechnology.

Authors:  Daniel Schindler
Journal:  Bioengineering (Basel)       Date:  2020-10-29

10.  Chance and necessity in the pleiotropic consequences of adaptation for budding yeast.

Authors:  Elizabeth R Jerison; Alex N Nguyen Ba; Michael M Desai; Sergey Kryazhimskiy
Journal:  Nat Ecol Evol       Date:  2020-03-09       Impact factor: 15.460

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