Literature DB >> 27085523

Exploiting budding yeast natural variation for industrial processes.

Francisco A Cubillos1,2,3.   

Abstract

For the last two decades, the natural variation of the yeast Saccharomyces cerevisiae has been massively exploited with the aim of understanding ecological and evolutionary processes. As a result, many new genetic variants have been uncovered, providing a large catalogue of alleles underlying complex traits. These alleles represent a rich genetic resource with the potential to provide new strains that can cope with the growing demands of industrial fermentation processes. When surveyed in detail, several of these variants have proven useful in wine and beer industries by improving nitrogen utilisation, fermentation kinetics, ethanol production, sulphite resistance and aroma production. Here, I illustrate how allele-specific expression and polymorphisms within the coding region of GDB1 underlie fermentation kinetic differences in synthetic wine must. Nevertheless, the genetic basis of how GDB1 variants and other natural alleles interact in foreign genetic backgrounds remains unclear. Further studies in large sets of strains, recombinant hybrids and multiple parental pairs will broaden our knowledge of the molecular and genetic basis of trait adaptation for utilisation in applied and industrial processes.

Entities:  

Keywords:  Alleles; Fermentation; Industry; Natural variation; Yeast

Mesh:

Year:  2016        PMID: 27085523     DOI: 10.1007/s00294-016-0602-6

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  47 in total

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Review 2.  The evolutionary significance of cis-regulatory mutations.

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Review 4.  Population genomics of yeasts: towards a comprehensive view across a broad evolutionary scale.

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Review 5.  The genomics of microbial domestication in the fermented food environment.

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Review 6.  A history of research on yeasts 10: foundations of yeast genetics.

Authors:  James A Barnett
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Review 7.  The fascinating and secret wild life of the budding yeast S. cerevisiae.

Authors:  Gianni Liti
Journal:  Elife       Date:  2015-03-25       Impact factor: 8.140

8.  Natural variation in non-coding regions underlying phenotypic diversity in budding yeast.

Authors:  Francisco Salinas; Carl G de Boer; Valentina Abarca; Verónica García; Mara Cuevas; Sebastian Araos; Luis F Larrondo; Claudio Martínez; Francisco A Cubillos
Journal:  Sci Rep       Date:  2016-02-22       Impact factor: 4.379

9.  QTL mapping of the production of wine aroma compounds by yeast.

Authors:  Damien Steyer; Chloe Ambroset; Christian Brion; Patricia Claudel; Pierre Delobel; Isabelle Sanchez; Claude Erny; Bruno Blondin; Francis Karst; Jean-Luc Legras
Journal:  BMC Genomics       Date:  2012-10-30       Impact factor: 3.969

10.  An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae.

Authors:  Stefan Wilkening; Gen Lin; Emilie S Fritsch; Manu M Tekkedil; Simon Anders; Raquel Kuehn; Michelle Nguyen; Raeka S Aiyar; Michael Proctor; Nikita A Sakhanenko; David J Galas; Julien Gagneur; Adam Deutschbauer; Lars M Steinmetz
Journal:  Genetics       Date:  2013-12-27       Impact factor: 4.562

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  15 in total

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Authors:  Yaniv Harari; Yoav Ram; Martin Kupiec
Journal:  Curr Genet       Date:  2018-03-10       Impact factor: 3.886

2.  Marker-free genetic manipulations in yeast using CRISPR/CAS9 system.

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Journal:  Curr Genet       Date:  2018-04-06       Impact factor: 3.886

3.  Mec1ATR is needed for extensive telomere elongation in response to ethanol in yeast.

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Journal:  Curr Genet       Date:  2017-08-05       Impact factor: 3.886

Review 4.  Synthetic genome recoding: new genetic codes for new features.

Authors:  James Kuo; Finn Stirling; Yu Heng Lau; Yekaterina Shulgina; Jeffrey C Way; Pamela A Silver
Journal:  Curr Genet       Date:  2017-10-05       Impact factor: 3.886

5.  Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses.

Authors:  Francisco A Cubillos; Claire Brice; Jennifer Molinet; Sebastién Tisné; Valentina Abarca; Sebastián M Tapia; Christian Oporto; Verónica García; Gianni Liti; Claudio Martínez
Journal:  G3 (Bethesda)       Date:  2017-06-07       Impact factor: 3.154

Review 6.  Microbial Resources and Enological Significance: Opportunities and Benefits.

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Journal:  Front Microbiol       Date:  2017-06-08       Impact factor: 5.640

7.  Differential Gene Expression and Allele Frequency Changes Favour Adaptation of a Heterogeneous Yeast Population to Nitrogen-Limited Fermentations.

Authors:  Eduardo I Kessi-Pérez; Belén Ponce; Jing Li; Jennifer Molinet; Camila Baeza; David Figueroa; Camila Bastías; Marco Gaete; Gianni Liti; Alvaro Díaz-Barrera; Francisco Salinas; Claudio Martínez
Journal:  Front Microbiol       Date:  2020-06-15       Impact factor: 5.640

8.  Fungal Diversity Analysis of Grape Musts from Central Valley-Chile and Characterization of Potential New Starter Cultures.

Authors:  Dinka Mandakovic; Rodrigo Pulgar; Jonathan Maldonado; Wladimir Mardones; Mauricio González; Francisco A Cubillos; Verónica Cambiazo
Journal:  Microorganisms       Date:  2020-06-24

9.  Distinct Transcriptional Changes in Response to Patulin Underlie Toxin Biosorption Differences in Saccharomyces Cerevisiae.

Authors:  Christian I Oporto; Carlos A Villarroel; Sebastián M Tapia; Verónica García; Francisco A Cubillos
Journal:  Toxins (Basel)       Date:  2019-07-10       Impact factor: 4.546

10.  GPD1 and ADH3 Natural Variants Underlie Glycerol Yield Differences in Wine Fermentation.

Authors:  Sebastián M Tapia; Mara Cuevas; Valentina Abarca; Verónica Delgado; Vicente Rojas; Verónica García; Claire Brice; Claudio Martínez; Francisco Salinas; Luis F Larrondo; Francisco A Cubillos
Journal:  Front Microbiol       Date:  2018-07-03       Impact factor: 5.640

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