Literature DB >> 29519893

Correction of Persistent Errors in Arabidopsis Reference Mitochondrial Genomes.

Daniel B Sloan1, Zhiqiang Wu2, Joel Sharbrough2.   

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Year:  2018        PMID： 29519893      PMCID： PMC5894837          DOI： 10.1105/tpc.18.00024

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


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  10 in total

Review 1.  Minireview: DNA replication in plant mitochondria.

Authors:  John D Cupp; Brent L Nielsen
Journal:  Mitochondrion       Date:  2014-03-26       Impact factor: 4.160

2.  The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides.

Authors:  M Unseld; J R Marienfeld; P Brandt; A Brennicke
Journal:  Nat Genet       Date:  1997-01       Impact factor: 38.330

Review 3.  Plant Mitochondrial Genomes: Dynamics and Mechanisms of Mutation.

Authors:  José M Gualberto; Kathleen J Newton
Journal:  Annu Rev Plant Biol       Date:  2017-02-09       Impact factor: 26.379

4.  Detection of ultra-rare mutations by next-generation sequencing.

Authors:  Michael W Schmitt; Scott R Kennedy; Jesse J Salk; Edward J Fox; Joseph B Hiatt; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-01       Impact factor: 11.205

5.  Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.

Authors:  K H Wolfe; W H Li; P M Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

6.  Physical mapping of the mitochondrial genome of Arabidopsis thaliana by cosmid and YAC clones.

Authors:  M Klein; U Eckert-Ossenkopp; I Schmiedeberg; P Brandt; M Unseld; A Brennicke; W Schuster
Journal:  Plant J       Date:  1994-09       Impact factor: 6.417

7.  Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity.

Authors:  Maria P Arrieta-Montiel; Vikas Shedge; Jaime Davila; Alan C Christensen; Sally A Mackenzie
Journal:  Genetics       Date:  2009-10-12       Impact factor: 4.562

8.  Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis.

Authors:  Jaime I Davila; Maria P Arrieta-Montiel; Yashitola Wamboldt; Jun Cao; Joerg Hagmann; Vikas Shedge; Ying-Zhi Xu; Detlef Weigel; Sally A Mackenzie
Journal:  BMC Biol       Date:  2011-09-27       Impact factor: 7.431

9.  Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.

Authors:  Éric Zampini; Étienne Lepage; Samuel Tremblay-Belzile; Sébastien Truche; Normand Brisson
Journal:  Genome Res       Date:  2015-03-23       Impact factor: 9.043

10.  Plant mitochondrial genome evolution can be explained by DNA repair mechanisms.

Authors:  Alan C Christensen
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416
  10 in total
  29 in total

1.  Trust but Verify: A Lesson in Technology Limitations and Error Propagation.

Authors:  C Robin Buell
Journal:  Plant Cell       Date:  2018-03-08       Impact factor: 11.277

2.  Revisiting published genomes with fresh eyes and new data: Revising old sequencing data can yield unexpected insights and identify errors.

Authors:  David R Smith
Journal:  EMBO Rep       Date:  2019-11-03       Impact factor: 8.807

3.  Reciprocal cybrids reveal how organellar genomes affect plant phenotypes.

Authors:  Pádraic J Flood; Tom P J M Theeuwen; Korbinian Schneeberger; Paul Keizer; Willem Kruijer; Edouard Severing; Evangelos Kouklas; Jos A Hageman; Raúl Wijfjes; Vanesa Calvo-Baltanas; Frank F M Becker; Sabine K Schnabel; Leo A J Willems; Wilco Ligterink; Jeroen van Arkel; Roland Mumm; José M Gualberto; Linda Savage; David M Kramer; Joost J B Keurentjes; Fred van Eeuwijk; Maarten Koornneef; Jeremy Harbinson; Mark G M Aarts; Erik Wijnker
Journal:  Nat Plants       Date:  2020-01-13       Impact factor: 15.793

4.  Triple-localized WHIRLY2 Influences Leaf Senescence and Silique Development via Carbon Allocation.

Authors:  Chenxing Huang; Jinfa Yu; Qian Cai; Yuxiang Chen; Yanyun Li; Yujun Ren; Ying Miao
Journal:  Plant Physiol       Date:  2020-09-08       Impact factor: 8.340

5.  One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis.

Authors:  Bastian Oldenkott; Matthias Burger; Anke-Christiane Hein; Anja Jörg; Jennifer Senkler; Hans-Peter Braun; Volker Knoop; Mizuki Takenaka; Mareike Schallenberg-Rüdinger
Journal:  Plant Cell       Date:  2020-07-02       Impact factor: 11.277

6.  Assessment of Protein Synthesis in Mitochondria Isolated from Rosette Leaves and Liquid Culture Seedlings of Arabidopsis.

Authors:  Malgorzata Kwasniak-Owczarek; Artur Tomal; Hanna Janska
Journal:  Methods Mol Biol       Date:  2022

7.  The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource.

Authors:  Klaas J van Wijk; Tami Leppert; Qi Sun; Sascha S Boguraev; Zhi Sun; Luis Mendoza; Eric W Deutsch
Journal:  Plant Cell       Date:  2021-11-04       Impact factor: 12.085

8.  HSDatabase-a database of highly similar duplicate genes from plants, animals, and algae.

Authors:  Xi Zhang; Yining Hu; David Roy Smith
Journal:  Database (Oxford)       Date:  2022-10-08       Impact factor: 4.462

9.  G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.

Authors:  H Busra Cagirici; Hikmet Budak; Taner Z Sen
Journal:  BMC Bioinformatics       Date:  2022-06-18       Impact factor: 3.307

10.  Sequencing and Reconstructing Helminth Mitochondrial Genomes Directly from Genomic Next-Generation Sequencing Data.

Authors:  Nikola Palevich; Paul Haydon Maclean
Journal:  Methods Mol Biol       Date:  2021
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