Literature DB >> 31680386

Revisiting published genomes with fresh eyes and new data: Revising old sequencing data can yield unexpected insights and identify errors.

David R Smith1.   

Abstract

Old data are like yesterday's leftovers: sapped of novelty and excitement. But revisiting old sequence data with a fresh mind and new techniques can yield new and unexpected results.
© 2019 The Author.

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Year:  2019        PMID： 31680386      PMCID： PMC6893286          DOI： 10.15252/embr.201949482

Source DB:  PubMed          Journal:  EMBO Rep        ISSN： 1469-221X            Impact factor:   8.807


  10 in total

1.  Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer.

Authors:  Vadim V Goremykin; Francesco Salamini; Riccardo Velasco; Roberto Viola
Journal:  Mol Biol Evol       Date:  2008-10-14       Impact factor: 16.240

2.  Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes.

Authors:  David Roy Smith; Patrick J Keeling
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-26       Impact factor: 11.205

3.  High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates.

Authors:  Sean D Gallaher; Sorel T Fitz-Gibbon; Daniela Strenkert; Samuel O Purvine; Matteo Pellegrini; Sabeeha S Merchant
Journal:  Plant J       Date:  2018-01-07       Impact factor: 6.417

4.  Correction of Persistent Errors in Arabidopsis Reference Mitochondrial Genomes.

Authors:  Daniel B Sloan; Zhiqiang Wu; Joel Sharbrough
Journal:  Plant Cell       Date:  2018-03-08       Impact factor: 11.277

5.  The mitochondrial and chloroplast genomes of the green alga Haematococcus are made up of nearly identical repetitive sequences.

Authors:  Xi Zhang; Nicholas Bauman; Rob Brown; Toby H Richardson; Srividya Akella; Elizabeth Hann; Robert Morey; David Roy Smith
Journal:  Curr Biol       Date:  2019-08-05       Impact factor: 10.834

6.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

7.  Next-Generation Sequencing of Haematococcus lacustris Reveals an Extremely Large 1.35-Megabase Chloroplast Genome.

Authors:  Nicholas Bauman; Srividya Akella; Elizabeth Hann; Robert Morey; Ariel S Schwartz; Rob Brown; Toby H Richardson
Journal:  Genome Announc       Date:  2018-03-22

8.  Evolutionary Analysis of Unicellular Species in Chlamydomonadales Through Chloroplast Genome Comparison With the Colonial Volvocine Algae.

Authors:  Yuxin Hu; Weiyue Xing; Huiyin Song; Huan Zhu; Guoxiang Liu; Zhengyu Hu
Journal:  Front Microbiol       Date:  2019-06-18       Impact factor: 5.640

9.  Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding.

Authors:  Birgit Kersten; Patricia Faivre Rampant; Malte Mader; Marie-Christine Le Paslier; Rémi Bounon; Aurélie Berard; Cristina Vettori; Hilke Schroeder; Jean-Charles Leplé; Matthias Fladung
Journal:  PLoS One       Date:  2016-01-22       Impact factor: 3.240

10.  Goodbye genome paper, hello genome report: the increasing popularity of 'genome announcements' and their impact on science.

Authors:  David Roy Smith
Journal:  Brief Funct Genomics       Date:  2017-05-01       Impact factor: 4.241
  10 in total
  1 in total

1.  An Unusual Amino Acid Substitution Within Hummingbird Cytochrome c Oxidase Alters a Key Proton-Conducting Channel.

Authors:  Cory D Dunn; Bala Anı Akpınar; Vivek Sharma
Journal:  G3 (Bethesda)       Date:  2020-07-07       Impact factor: 3.154
  1 in total

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