| Literature DB >> 29509901 |
Ida K Karlsson1, Alexander Ploner1, Yunzhang Wang1, Margaret Gatz1,2, Nancy L Pedersen1,2, Sara Hägg1.
Abstract
BACKGROUND: This study aims to investigate if DNA methylation of the apolipoprotein E (APOE) locus affects the risks of dementia, Alzheimeŕs disease (AD) or cardiovascular disease (CVD).Entities:
Keywords: Alzheimeŕs disease; Epigenetics; ageing; apolipoprotein E; cardiovascular disease; dementia; methylation
Year: 2018 PMID: 29509901 PMCID: PMC7263750 DOI: 10.1093/ije/dyy025
Source DB: PubMed Journal: Int J Epidemiol ISSN: 0300-5771 Impact factor: 7.196
Fig 1Structure of the Apolipoprotein E locus and categorization of methylation regions. Chromosome location of the Apolipoprotein E gene in the top panel, followed by location of the ε2 and ε4 SNPs and the four exons. The fourth panel shows mean M-values of CpG sites within the gene. The CpG sites were categorized into three regions based on location and methylation status: region 1 in the promoter (cg14123992, cg04406254, cg01032398), region 2 in the first two exons and introns (cg26190885, cg12049787, cg08955609, cg18768621, cg19514613, cg06750524), and region 3 in the fourth exon (cg16471933, cg05501958, cg18799241, cg21879725), which harbors both a CpG island and the ε2 and ε4 alleles.
Figure 2Odds ratios and 95% confidence intervals of a) dementia, b) Alzheimeŕs disease, and c) cardiovascular disease in relation to M-value of CpG regions in the Apolipoprotein E gene. Analyses of the total sample are adjusted for age, sex, education, smoking, and relatedness among twins. Co-twin control analyses are adjusted for age, education, and smoking.aTotal sample: 135 cases, 312 controls; Co-twin control: 40 discordant pairs.bTotal sample: n=82 cases, n=312 controls; Co-twin control: n=22 discordant pairs.cTotal sample: n=205 cases, n=242 controls; Co-twin control: n=69 discordant pairs.
Odds ratio of disease in relation to methylation of the Apolipoprotein E gene, stratified by Apolipoprotein E genotype
| CpG region 1 | CpG region 2 | CpG region 3 | ||||
|---|---|---|---|---|---|---|
| Interaction p-value | 0.47 | 0.62 | 0.99 | |||
| | 1.38 | (0.66–2.88) | 1.03 | (0.54–1.93) | 1.09 | (0.55–2.16) |
| | 1.11 | (0.83–1.49) | 1.14 | (0.86–1.52) | 1.05 | (0.77–1.41) |
| | 1.38 | (0.96–1.97) | 1.05 | (0.75–1.48) | ||
| Interaction p-value | 0.34 | 0.65 | 0.72 | |||
| | 1.29 | (0.57–2.92) | 1.19 | (0.66–2.14) | 0.97 | (0.46–2.03) |
| | 1.06 | (0.70–1.60) | 1.33 | (0.92–1.93) | 0.87 | (0.55–1.35) |
| | 1.11 | (0.77–1.58) | ||||
| Interaction p-value | 0.40 | 0.97 | 0.54 | |||
| | 0.90 | (0.51–1.57) | 0.79 | (0.45–1.36) | 0.73 | (0.41–1.32) |
| | 1.17 | (0.89–1.55) | 0.85 | (0.66–1.10) | 0.99 | (0.75–1.30) |
| | 0.87 | (0.59–1.27) | 0.85 | (0.58–1.26) | 1.08 | (0.77–1.50) |
Abbreviations:APOE, Apolipoprotein E.
Odds ratios (95% confidence intervals) of dementia, Alzheimeŕs disease, and cardiovascular disease in relation to M-value of CpG regions in theAPOE gene, stratified byAPOE genotype.APOE ε2 include genotypes ε2/ ε2 and ε2/ ε3, ε3 genotype ε3/ ε3, and ε4 genotypes ε3/ ε4 and ε4/ ε4. The models are adjusted for age at blood sample, sex, education, smoking, and relatedness among twins.
n=123 cases, n=291 controls.
n=74 cases, n=291 controls.
n=188 cases, n=226 controls.
Odds ratio and cause specific hazard rate of dementia in relation to methylation of the Apolipoprotein E gene, separated into prevalent and incident disease
| CpG region 1 | CpG region 2 | CpG region 3 | ||||
|---|---|---|---|---|---|---|
| | 1.10 | (0.82-1.48) | 1.04 | (0.76-1.44) | ||
| | 1.25 | (0.97-1.62) | 1.06 | (0.83-1.37) | 1.27 | (0.97-1.66) |
| <70c | 0.80 | (0.49-1.33) | 1.16 | (0.76-1.77) | ||
| 70–80d | 1.06 | (0.79-1.41) | 0.99 | (0.77-1.29) | 0.95 | (0.74-1.20) |
| >80e | 1.24 | (0.83-1.86) | 1.18 | (0.89-1.57) | 0.93 | (0.63-1.37) |
a) Odds ratios (95% confidence intervals) of dementia in relation to M-value of CpG regions in the Apolipoprotein E gene, stratified into prevalent and incident dementia in relation to time of blood sample. The models are adjusted for age, sex, education, smoking, and relatedness among twins.
b) Cause specific hazard rate (95% confidence intervals) of incident dementia in relation to M-value of CpG regions in the Apolipoprotein E gene, stratified on age at blood sample. The model is adjusted for age, sex, education, smoking, and relatedness among twins.
n=51 cases, n=312 controls.
n=84 cases, n=312 controls.
n=201 individuals, n=404 samples, n=3199 person years, n=25 dementia events.
n=268 individuals, 383 samples, n=2421 person years, n=52 dementia events.
n=137 individuals, 207 samples, n=745 person years, n=32 dementia events.