Literature DB >> 24038819

Epigenetic studies in Alzheimer's disease: current findings, caveats, and considerations for future studies.

Katie Lunnon1, Jonathan Mill.   

Abstract

Alzheimer's disease (AD) is a sporadic, chronic neurodegenerative disease, usually occurring late in life. The last decade has witnessed tremendous advances in our understanding about the genetic basis of AD, but a large amount of the variance in disease risk remains to be explained. Epigenetic mechanisms, which developmentally regulate gene expression via modifications to DNA, histone proteins, and chromatin, have been hypothesized to play a role in other complex neurobiological diseases, and studies to identify genome-wide epigenetic changes in AD are currently under way. However, the simple brute-force approach that has been successfully employed in genome-wide association studies is unlikely to be successful in epigenome-wide association studies of neurodegeneration. A more academic approach to understanding the role of epigenetic variation in AD is required, with careful consideration of study design, methodological approaches, tissue-specificity, and causal inference. In this article, we review the empirical literature supporting a role for epigenetic processes in AD, and discuss important considerations and future directions for this new and emerging field of research.
© 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  DNA methylation; brain; dementia; genetics; neurodegeneration

Mesh:

Year:  2013        PMID: 24038819      PMCID: PMC3947441          DOI: 10.1002/ajmg.b.32201

Source DB:  PubMed          Journal:  Am J Med Genet B Neuropsychiatr Genet        ISSN: 1552-4841            Impact factor:   3.568


  129 in total

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2.  Variant TREM2 as risk factor for Alzheimer's disease.

Authors:  Harald Neumann; Mark J Daly
Journal:  N Engl J Med       Date:  2012-11-14       Impact factor: 91.245

3.  The methylation status of cytosines in a tau gene promoter region alters with age to downregulate transcriptional activity in human cerebral cortex.

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Journal:  Neurosci Lett       Date:  1999-11-12       Impact factor: 3.046

4.  Toward an Alzheimer's disease diagnosis via high-resolution blood gene expression.

Authors:  Pascale Fehlbaum-Beurdeley; Anne Charlotte Jarrige-Le Prado; Diego Pallares; Jennifer Carrière; Caroline Guihal; Cyril Soucaille; Fabien Rouet; Dominique Drouin; Olivier Sol; Heather Jordan; Darong Wu; Ling Lei; Richard Einstein; Fabien Schweighoffer; Laurent Bracco
Journal:  Alzheimers Dement       Date:  2010-01       Impact factor: 21.566

5.  Twins with Alzheimer's disease.

Authors:  R H Cook; S A Schneck; D B Clark
Journal:  Arch Neurol       Date:  1981-05

Review 6.  DNA methylation profiling in the clinic: applications and challenges.

Authors:  Holger Heyn; Manel Esteller
Journal:  Nat Rev Genet       Date:  2012-09-04       Impact factor: 53.242

7.  Enrichment of cis-regulatory gene expression SNPs and methylation quantitative trait loci among bipolar disorder susceptibility variants.

Authors:  E R Gamazon; J A Badner; L Cheng; C Zhang; D Zhang; N J Cox; E S Gershon; J R Kelsoe; T A Greenwood; C M Nievergelt; C Chen; R McKinney; P D Shilling; N J Schork; E N Smith; C S Bloss; J I Nurnberger; H J Edenberg; T Foroud; D L Koller; W A Scheftner; W Coryell; J Rice; W B Lawson; E A Nwulia; M Hipolito; W Byerley; F J McMahon; T G Schulze; W H Berrettini; J B Potash; P P Zandi; P B Mahon; M G McInnis; S Zöllner; P Zhang; D W Craig; S Szelinger; T B Barrett; C Liu
Journal:  Mol Psychiatry       Date:  2012-01-03       Impact factor: 15.992

8.  An epigenetic blockade of cognitive functions in the neurodegenerating brain.

Authors:  Johannes Gräff; Damien Rei; Ji-Song Guan; Wen-Yuan Wang; Jinsoo Seo; Krista M Hennig; Thomas J F Nieland; Daniel M Fass; Patricia F Kao; Martin Kahn; Susan C Su; Alireza Samiei; Nadine Joseph; Stephen J Haggarty; Ivana Delalle; Li-Huei Tsai
Journal:  Nature       Date:  2012-02-29       Impact factor: 49.962

9.  Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.

Authors:  Adam C Naj; Gyungah Jun; Gary W Beecham; Li-San Wang; Badri Narayan Vardarajan; Jacqueline Buros; Paul J Gallins; Joseph D Buxbaum; Gail P Jarvik; Paul K Crane; Eric B Larson; Thomas D Bird; Bradley F Boeve; Neill R Graff-Radford; Philip L De Jager; Denis Evans; Julie A Schneider; Minerva M Carrasquillo; Nilufer Ertekin-Taner; Steven G Younkin; Carlos Cruchaga; John S K Kauwe; Petra Nowotny; Patricia Kramer; John Hardy; Matthew J Huentelman; Amanda J Myers; Michael M Barmada; F Yesim Demirci; Clinton T Baldwin; Robert C Green; Ekaterina Rogaeva; Peter St George-Hyslop; Steven E Arnold; Robert Barber; Thomas Beach; Eileen H Bigio; James D Bowen; Adam Boxer; James R Burke; Nigel J Cairns; Chris S Carlson; Regina M Carney; Steven L Carroll; Helena C Chui; David G Clark; Jason Corneveaux; Carl W Cotman; Jeffrey L Cummings; Charles DeCarli; Steven T DeKosky; Ramon Diaz-Arrastia; Malcolm Dick; Dennis W Dickson; William G Ellis; Kelley M Faber; Kenneth B Fallon; Martin R Farlow; Steven Ferris; Matthew P Frosch; Douglas R Galasko; Mary Ganguli; Marla Gearing; Daniel H Geschwind; Bernardino Ghetti; John R Gilbert; Sid Gilman; Bruno Giordani; Jonathan D Glass; John H Growdon; Ronald L Hamilton; Lindy E Harrell; Elizabeth Head; Lawrence S Honig; Christine M Hulette; Bradley T Hyman; Gregory A Jicha; Lee-Way Jin; Nancy Johnson; Jason Karlawish; Anna Karydas; Jeffrey A Kaye; Ronald Kim; Edward H Koo; Neil W Kowall; James J Lah; Allan I Levey; Andrew P Lieberman; Oscar L Lopez; Wendy J Mack; Daniel C Marson; Frank Martiniuk; Deborah C Mash; Eliezer Masliah; Wayne C McCormick; Susan M McCurry; Andrew N McDavid; Ann C McKee; Marsel Mesulam; Bruce L Miller; Carol A Miller; Joshua W Miller; Joseph E Parisi; Daniel P Perl; Elaine Peskind; Ronald C Petersen; Wayne W Poon; Joseph F Quinn; Ruchita A Rajbhandary; Murray Raskind; Barry Reisberg; John M Ringman; Erik D Roberson; Roger N Rosenberg; Mary Sano; Lon S Schneider; William Seeley; Michael L Shelanski; Michael A Slifer; Charles D Smith; Joshua A Sonnen; Salvatore Spina; Robert A Stern; Rudolph E Tanzi; John Q Trojanowski; Juan C Troncoso; Vivianna M Van Deerlin; Harry V Vinters; Jean Paul Vonsattel; Sandra Weintraub; Kathleen A Welsh-Bohmer; Jennifer Williamson; Randall L Woltjer; Laura B Cantwell; Beth A Dombroski; Duane Beekly; Kathryn L Lunetta; Eden R Martin; M Ilyas Kamboh; Andrew J Saykin; Eric M Reiman; David A Bennett; John C Morris; Thomas J Montine; Alison M Goate; Deborah Blacker; Debby W Tsuang; Hakon Hakonarson; Walter A Kukull; Tatiana M Foroud; Jonathan L Haines; Richard Mayeux; Margaret A Pericak-Vance; Lindsay A Farrer; Gerard D Schellenberg
Journal:  Nat Genet       Date:  2011-04-03       Impact factor: 38.330

10.  Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells.

Authors:  Madeleine P Ball; Jin Billy Li; Yuan Gao; Je-Hyuk Lee; Emily M LeProust; In-Hyun Park; Bin Xie; George Q Daley; George M Church
Journal:  Nat Biotechnol       Date:  2009-03-29       Impact factor: 54.908

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  30 in total

1.  Folic Acid Alters Methylation Profile of JAK-STAT and Long-Term Depression Signaling Pathways in Alzheimer's Disease Models.

Authors:  Wen Li; Huan Liu; Min Yu; Xumei Zhang; Yan Zhang; Hongbo Liu; John X Wilson; Guowei Huang
Journal:  Mol Neurobiol       Date:  2015-12-01       Impact factor: 5.590

Review 2.  Epigenetic regulation of mitochondrial function in neurodegenerative disease: New insights from advances in genomic technologies.

Authors:  Matthew Devall; Janou Roubroeks; Jonathan Mill; Michael Weedon; Katie Lunnon
Journal:  Neurosci Lett       Date:  2016-02-10       Impact factor: 3.046

Review 3.  Dissecting Complex and Multifactorial Nature of Alzheimer's Disease Pathogenesis: a Clinical, Genomic, and Systems Biology Perspective.

Authors:  Puneet Talwar; Juhi Sinha; Sandeep Grover; Chitra Rawat; Suman Kushwaha; Rachna Agarwal; Vibha Taneja; Ritushree Kukreti
Journal:  Mol Neurobiol       Date:  2015-09-09       Impact factor: 5.590

Review 4.  Promoter DNA hypermethylation - Implications for Alzheimer's disease.

Authors:  Yiyuan Liu; Minghui Wang; Edoardo M Marcora; Bin Zhang; Alison M Goate
Journal:  Neurosci Lett       Date:  2019-07-24       Impact factor: 3.046

Review 5.  Clinical effects of chemical exposures on mitochondrial function.

Authors:  Zarazuela Zolkipli-Cunningham; Marni J Falk
Journal:  Toxicology       Date:  2017-07-27       Impact factor: 4.221

Review 6.  The mitochondrial epigenome: a role in Alzheimer's disease?

Authors:  Matthew Devall; Jonathan Mill; Katie Lunnon
Journal:  Epigenomics       Date:  2014       Impact factor: 4.778

7.  Histone acetylation maps in aged mice developmentally exposed to lead: epigenetic drift and Alzheimer-related genes.

Authors:  Aseel Eid; Syed Waseem Bihaqi; Christopher Hemme; John M Gaspar; Ronald P Hart; Nasser H Zawia
Journal:  Epigenomics       Date:  2018-05-03       Impact factor: 4.778

8.  Age-related epigenetic changes in hippocampal subregions of four animal models of Alzheimer's disease.

Authors:  Roy Lardenoije; Daniël L A van den Hove; Monique Havermans; Anne van Casteren; Kevin X Le; Roberta Palmour; Cynthia A Lemere; Bart P F Rutten
Journal:  Mol Cell Neurosci       Date:  2017-11-04       Impact factor: 4.314

9.  Developmental exposure to lead (Pb) alters the expression of the human tau gene and its products in a transgenic animal model.

Authors:  M Dash; A Eid; G Subaiea; J Chang; R Deeb; A Masoud; W E Renehan; A Adem; N H Zawia
Journal:  Neurotoxicology       Date:  2016-06-09       Impact factor: 4.294

10.  Altered microRNA, mRNA, and Protein Expression of Neurodegeneration-Related Biomarkers and Their Transcriptional and Epigenetic Modifiers in a Human Tau Transgenic Mouse Model in Response to Developmental Lead Exposure.

Authors:  Anwar M Masoud; Syed W Bihaqi; Bothaina Alansi; Miriam Dash; Gehad M Subaiea; William E Renehan; Nasser H Zawia
Journal:  J Alzheimers Dis       Date:  2018       Impact factor: 4.472

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